1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagctagcacctcgctcctcctcctcctcctctcccgcatttgcgatggccggcgagctggctgacggcgagcgagcagGGCGGGCCGTTCTGGCGGGTGGCGACGGGGCGGCGCGACGGGAGGGTGTCGATCAAGCAGGAGGCGCTGGACCAGATCCCGGCGCCGACCATGAACTTCA
species | Oryza sativa |
transcript | LOC_Os06g46799.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTGCGCCGACATCCTCGCGCTCGCCACCCGCGACGCCATCTCCGTCATC GGCGGGCCGTTCTGGCGGGTGGCGACGGGGCGGCGCGACGGGAGGGTGTCGEST: gi|29625348|gb|CB630359.1|CB630359
genomic: CCTGCGCCGACATCCTCGCGCTCGCCACCCGCGACGCCATCTCCGTCATCgtaagctagc ... gagcgagcagGGCGGGCCGTTCTGGCGGGTGGCGACGGGGCGGCGCGACGGGAGGGTGTCG
EST: CCTGCGCCGACATCCTCGCGCTCGCCACCCGCGACGCCATCTCCGTCATC GGCGGGCCGTTCTGGCGGGTGGCGACGGGGCGGCGCGACGGGAGGGTGTCG
genomic: CCTGCGCCGACATCCTCGCGCTCGCCACCCGCGACGCCATCTCCGTCATCgtaagctagc ... gagcgagcagGGCGGGCCGTTCTGGCGGGTGGCGACGGGGCGGCGCGACGGGAGGGTGTCG
tcctcctctcccgcatttgcgatggccggcgagctggctgacggcgagcgagcagGGCGGGCCGTTCTGGCGGGTGGCGACGGGGCGGCGCGACGGGAGGGTGTCGATCAAGCAGGAGGCGCTGGACCAGATCCCGGCGCCGACCATGAACTTCA
ggctgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctagcacctcgctcctcctcctcctcctctcccgcatttgcgatggccggcgagctggctgacggcgagcgagcagGGCGGGCCGTTCTGGCGGGTGGCGACGGGGCGGCGCGACGGGAGGGTGTCGATCAAGCAGGAGGCGCTGGACCAGATCCCGGCGCCGACCATGAACTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA