1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgtgtgtgcagtacatatatagatccatgtctatatatggttttctagttgcactagctagcatggttagaactagggttagcttatgctctctctctctctctctctcatgttttgtagattgttgtttttcagaaattcagacttctgtatctctggatctctcatgtgttgtagattgttgttttttcagAAATTCAGACTTGGGAAGCAGCACAAGGATTTCAACGACCACTCGGTTAAGGATG
species | Oryza sativa |
transcript | LOC_Os06g45410.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTATGGGAGTCAAGGGACTCACACTTTACCATCTCAAGAGCCATCTTCAG AAATTCAGACTTGGGAAGCAGCACAAGGATTTCAACGACCACTCGGTTAAGEST: gi|58679249|gb|CK067936.1|CK067936
genomic: TTATGGGAGTCAAGGGACTCACACTTTACCATCTCAAGAGCCATCTTCAGgtgtgtgtgc ... gttttttcagAAATTCAGACTTGGGAAGCAGCACAAGGATTTCAACGACCACTCGGTTAAG
EST: TTATGGGAGTCAAGGGACTCACACTTTACCATCTCAAGAGCCATCTTCAG AAATTCAGACTTGGGAAGCAGCACAAGGATTTCAACGACCACTCGGTTAAG
genomic: TTATGGGAGTCAAGGGACTCACACTTTACCATCTCAAGAGCCATCTTCAGgtgtgtgtgc ... gttttttcagAAATTCAGACTTGGGAAGCAGCACAAGGATTTCAACGACCACTCGGTTAAG
ttcagacttctgtatctctggatctctcatgtgttgtagattgttgttttttcagAAATTCAGACTTGGGAAGCAGCACAAGGATTTCAACGACCACTCGGTTAAGGATG
ttgttttttc CT-rich tract
ttgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgtgcagtacatatatagatccatgtctatatatggttttctagttgcactagctagcatggttagaactagggttagcttatgctctctctctctctctctctcatgttttgtagattgttgtttttcagaaattcagacttctgtatctctggatctctcatgtgttgtagattgttgttttttcagAAATTCAGACTTGGGAAGCAGCACAAGGATTTCAACGACCACTCGGTTAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG