1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cttttctatttgttgttcaacagtttatgtgacagtataacggtgttgttaacaatcgttgctttgctcagatagtgatattgtttagtgtaaactgcagGTGGGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAGAG
species | Oryza sativa |
transcript | LOC_Os06g39344.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTG GTGGGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAGEST: gi|88690849|gb|CI734928.1|CI734928
genomic: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTGgtgatcacct ... taaactgcagGTGGGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAG
EST: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTG GTGGGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAGEST: gi|58695138|gb|CK083825.1|CK083825
genomic: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTGgtgatcacct ... taaactgcagGTGGGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAG
EST: TCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTG GTGGGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAG
genomic: TCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTGgtgatcacct ... taaactgcagGTGGGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAG
ttgttaacaatcgttgctttgctcagatagtgatattgtttagtgtaaactgcagGTGGGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAGAG
tgttaac putative branch site (score: 9)
atattgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttctatttgttgttcaacagtttatgtgacagtataacggtgttgttaacaatcgttgctttgctcagatagtgatattgtttagtgtaaactgcagGTGGGGATGTGAAGAGACTTGCTAATGATTGCACAATGCCAGAGATAATAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - -ttgttgt
- - - - - - - - - - - - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - aacaatc