1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgatcacctctctgtttttattcgttgaaaaagctgggccttgtacattgaacatgctgttttgcgcctttttatttccggagcattggagatgtttgcaaataagattcatgaccaatgcagGGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAG
species | Oryza sativa |
transcript | LOC_Os06g39344.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTG GGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACEST: gi|88736738|gb|CI760246.1|CI760246
genomic: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTGgtgatcacct ... accaatgcagGGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACAC
EST: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTG GGATGGATATTAAGEST: gi|88415000|gb|CI601832.1|CI601832
genomic: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTGgtgatcacct ... accaatgcagGGATGGATATTAAG
EST: TGTCAAGTGTGTTCTTGTGGAAAGCACTTCACCCCGTGCCTTCTCAGCTG GGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACEST: gi|29664859|gb|CB661134.1|CB661134
genomic: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTGgtgatcacct ... accaatgcagGGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGAC
EST: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTG GGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACEST: gi|29658499|gb|CB654774.1|CB654774
genomic: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTGgtgatcacct ... accaatgcagGGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACAC
EST: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTG GGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACEST: gi|88367425|gb|CI566391.1|CI566391
genomic: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTGgtgatcacct ... accaatgcagGGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACAC
EST: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTG GGATGGATATTAAGGGTGTTGCACCAGAAATTCAAAAGGACAAGAGCACACEST: gi|38470297|gb|CF954428.1|CF954428
genomic: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTGgtgatcacct ... accaatgcagGGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACAC
EST: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTG GGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACAC
genomic: TGTCAAGTGTGTTCTTGTGGAAAGCAGTTCACCCCGTGCCTTCTCAGCTGgtgatcacct ... accaatgcagGGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACAC
tttttatttccggagcattggagatgtttgcaaataagattcatgaccaatgcagGGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAG
aaataagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatcacctctctgtttttattcgttgaaaaagctgggccttgtacattgaacatgctgttttgcgcctttttatttccggagcattggagatgtttgcaaataagattcatgaccaatgcagGGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA