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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaccattagttgaacttctcttgctcaatttcattattttatactcatgaaagtctatctgttagcagAATGCCAGTCGGAGAGAAATGGAGAGACAAGATGCTCCGATTACTAGACACCCAGAGTTTCGCTACAAAAGTGAATTTCAGAGTCATGAACCTGAG

Basic information

species Oryza sativa
transcript LOC_Os06g36770.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g36770.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G165418_T02 (Zea mays), 3'ss of exon 3
gtaagcaccattagt-tgaacttctcttg--ctcaatttcattattttatactcatgaaagtctatctgttagcagAATGCCAGTCGGAGAGAAATGGAGAGACAAGATGCTCCGATTACTAGACACCCAGAGTTTCGCTACAAAAGTGAATTTCAGAGTCATGAACCTGAG
||||||||||   || ||||||| |||||   |  |||| | ||||||   || ||  ||||   | |   ||||||||||||| | ||||||| ||||||||||||||| |||  ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
gtaagcaccacatgtatgaacttatcttggttttgattttaatatttttccctaat--aagttgttataccagcagAATGCCAGCCAGAGAGAACTGGAGAGACAAGATGTTCCAGTTACTAGACACCCAGAGTTCCGCTACAAAACTGAATTTCAGAGTCATGAACCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58667099|gb|CK055785.1|CK055785
EST:     GAGACAGAGGAGGACGTGTTGTTTTATTTGAAAGGACAGATGCTCGGGAT                         AATGCCAGTCGGAGAGAAATGGAGAGACAAGATGCTCCGATTACTAGACAC
genomic: GAGACAGAGGAGGACGTGTTGTTTTATTTGAAAGGACAGATGCTCGGGATgtaagcacca ... ctgttagcagAATGCCAGTCGGAGAGAAATGGAGAGACAAGATGCTCCGATTACTAGACAC
EST: gi|88300529|gb|CI587333.1|CI587333
EST:     GAGACAGAGGAGGACGTGTTGTTTTATTTGAAAGGACAGATGCTCGGGAT                         AATGCCAGTCGGAGAGAAATGGAGAGAGAAGATGCTCCGATTACTAGACAC
genomic: GAGACAGAGGAGGACGTGTTGTTTTATTTGAAAGGACAGATGCTCGGGATgtaagcacca ... ctgttagcagAATGCCAGTCGGAGAGAAATGGAGAGACAAGATGCTCCGATTACTAGACAC
EST: gi|66912787|gb|CX099635.1|CX099635
EST:     GAGACAGAGGAGGACGTGTTGTTTTATTTGAAAGGACAGATGCTCGGGAT                         AATGCCAGTCGGAGAGAAATGGAGAGACAAGATGCTCCGATTACTAGACAC
genomic: GAGACAGAGGAGGACGTGTTGTTTTATTTGAAAGGACAGATGCTCGGGATgtaagcacca ... ctgttagcagAATGCCAGTCGGAGAGAAATGGAGAGACAAGATGCTCCGATTACTAGACAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttctcttgctcaatttcattattttatactcatgaaagtctatctgttagcagAATGCCAGTCGGAGAGAAATGGAGAGACAAGATGCTCCGATTACTAGACACCCAGAGTTTCGCTACAAAAGTGAATTTCAGAGTCATGAACCTGAG
                                        tctatct  CT-rich tract
             aatttcattattttat  TA-rich tract