1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taatctagaaattgaaatctttttcaacggtggtagtaaaagatatttcttaaaaaaaaggaattaaccggaataatatggtgatgttttaaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCGGGTCAACCACATCAACCAGACATATGATTTC
species | Oryza sativa |
transcript | LOC_Os06g36560.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAG GAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCGEST: gi|38475187|gb|CF959320.1|CF959320
genomic: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAGgtcagctaca ... aaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
EST: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAG GAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCGEST: gi|86851034|gb|CI311252.1|CI311252
genomic: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAGgtcagctaca ... aaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
EST: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAG GAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCGEST: gi|88353796|gb|CI634587.1|CI634587
genomic: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAGgtcagctaca ... aaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
EST: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAG GAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCGEST: gi|58670144|gb|CK058830.1|CK058830
genomic: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAGgtcagctaca ... aaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
EST: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAG GAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCGEST: gi|87009635|gb|CI309156.1|CI309156
genomic: GACGGCGGCTTCGTCGTGCCGGACTCCAACGCCTTCGGCAACGCCTTCAGgtcagctaca ... aaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
EST: GCAACGCCTTCAG GAATTATGAGGCCGAGACTGAGAGGGAGGAGACGGTGGAGGAGTTCTACCG
genomic: GCAACGCCTTCAGgtcagctaca ... aaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCG
tttcttaaaaaaaaggaattaaccggaataatatggtgatgttttaaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCGGGTCAACCACATCAACCAGACATATGATTTC
aattaac putative branch site (score: 52)
tctcc putative PPT
taaaaaaaaggaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatctagaaattgaaatctttttcaacggtggtagtaaaagatatttcttaaaaaaaaggaattaaccggaataatatggtgatgttttaaatctccagGAATTATGAGGCCGAGTCTGAGAGGAAGGAGACGGTGGAGGAGTTCTACCGGGTCAACCACATCAACCAGACATATGATTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgatg