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...acatgttcagttctagaatatatgtgagtgcttaaaatgagttcttctaatcttaaaccattttgttcgcggaactaaaccaatcaaatttgcaaattagGGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAAACTGGCCTATGGGGAGAACTGTGAGTTCATCAAGGACAAGAGGATCGCA
species | Oryza sativa |
transcript | LOC_Os06g35540.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACAT GGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAAEST: gi|58607841|gb|CK035874.1|CK035874
genomic: CTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACATgtgagatctc ... tgcaaattagGGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAA
EST: CTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACAT GGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAAEST: gi|13807574|gb|AU181996.1|AU181996
genomic: CTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACATgtgagatctc ... tgcaaattagGGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAA
EST: CTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACAT GGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAAEST: gi|88406564|gb|CI599057.1|CI599057
genomic: CTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACATgtgagatctc ... tgcaaattagGGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAA
EST: CTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACAT GGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAAEST: gi|88392405|gb|CI612879.1|CI612879
genomic: CTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACATgtgagatctc ... tgcaaattagGGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAA
EST: CTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACAT GGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAAEST: gi|88403459|gb|CI573182.1|CI573182
genomic: CTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACATgtgagatctc ... tgcaaattagGGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAA
EST: CTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACAT GGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAA
genomic: CTGGAGTGCGTGCGCGAGGCGGAGCGGCGGATCGCCGGGAGCATGAACATgtgagatctc ... tgcaaattagGGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAA
tctaatcttaaaccattttgttcgcggaactaaaccaatcaaatttgcaaattagGGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAAACTGGCCTATGGGGAGAACTGTGAGTTCATCAAGGACAAGAGGATCGCA
aactaaa putative branch site (score: 18)
aaatttgcaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgttcagttctagaatatatgtgagtgcttaaaatgagttcttctaatcttaaaccattttgttcgcggaactaaaccaatcaaatttgcaaattagGGAGTACCTTCCAATGGGTGGAAGCATAAAGATGATTGAAGAATCACTTAAACTGGCCTATGGGGAGAACTGTGAGTTCATCAAGGACAAGAGGATCGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
-catgttc
- - - - - - - - - - - - - - tgcttaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaaccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaaa