1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaagtcctgggacccattaaagttttgagtaaatattgaaaacaactactgaaaactcgatgtaataattattctgtattttttttaaccatgtatgcagATTTGAGGACTGGAGATCTGAGCAGTCAGTTATGTCACCACGGAGGCATAATGCTTTAAGTTCACTTAAAGAAAGAACTGCTGGAGTTTTTGCATTCCTA
species | Oryza sativa |
transcript | LOC_Os06g33570.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGGATTTTTGGAAAATGATGATGGGAAGAGAGGACAAATATGTGAG ATTTGAGGACTGGAGATCTGAGCAGTCAGTTATGTCACCACGGAGGCATAAEST: gi|29641766|gb|CB646773.1|CB646773
genomic: TTGGTGGATTTTTGGAAAATGATGATGGGAAGAGAGGACAAATATGTGAGgtcagtttcc ... atgtatgcagATTTGAGGACTGGAGATCTGAGCAGTCAGTTATGTCACCACGGAGGCATAA
EST: TTGGTGGATTTTTGGAAAATGATGATGGGAAGAGAGGACAAATATGTGAG ATTTGAGGACTGGAGATCTGAGCAGTCAGTTATGTCACCACGGAGGCATAAEST: gi|29628216|gb|CB633227.1|CB633227
genomic: TTGGTGGATTTTTGGAAAATGATGATGGGAAGAGAGGACAAATATGTGAGgtcagtttcc ... atgtatgcagATTTGAGGACTGGAGATCTGAGCAGTCAGTTATGTCACCACGGAGGCATAA
EST: TTGGTGGATTTTTGGAAAATGATGATGGGAAGAGAGGACAAATATGTGAG ATTTGAGGACTGGAGATCTGAGCAGTCAGTTATGTCACCACGGAGGCATAA
genomic: TTGGTGGATTTTTGGAAAATGATGATGGGAAGAGAGGACAAATATGTGAGgtcagtttcc ... atgtatgcagATTTGAGGACTGGAGATCTGAGCAGTCAGTTATGTCACCACGGAGGCATAA
ctactgaaaactcgatgtaataattattctgtattttttttaaccatgtatgcagATTTGAGGACTGGAGATCTGAGCAGTCAGTTATGTCACCACGGAGGCATAATGCTTTAAGTTCACTTAAAGAAAGAACTGCTGGAGTTTTTGCATTCCTA
ttttaac putative branch site (score: 22)
taataattattctgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagtcctgggacccattaaagttttgagtaaatattgaaaacaactactgaaaactcgatgtaataattattctgtattttttttaaccatgtatgcagATTTGAGGACTGGAGATCTGAGCAGTCAGTTATGTCACCACGGAGGCATAATGCTTTAAGTTCACTTAAAGAAAGAACTGCTGGAGTTTTTGCATTCCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - actactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcgatg