1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acccaggacatgctttctctcttaatccacacgtgtgcatgctccatgcttcttcaaaattagtttgtcactaatctgtgtttatggtctccttatgcagGTGCCCTATACGGCAGACCAAGATATGTTCAGCAAAGACAGTATATATGAAGATTTCTGTGTGGACGATGTTGATCTTAGTTTCGAAAATTATGAGGAAC
species | Oryza sativa |
transcript | LOC_Os06g19444.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACTTGCTACTGATCAGATGGCTGGATCCGTGGATTCGACATCAGCTAAG GTGCCCTATACGGCAGACCAAGATATGTTCAGCAAAGACAGTATATATGAAEST: gi|58691655|gb|CK080342.1|CK080342
genomic: CACTTGCTACTGATCAGATGGCTGGATCCGTGGATTCGACATCAGCTAAGgtgctataag ... ccttatgcagGTGCCCTATACGGCAGACCAAGATATGTTCAGCAAAGACAGTATATATGAA
EST: CACTTGCTACTGATCAGATGGCTGGATCCGTGGATTCGACATCAGCTAAG GTGCCCTATACGGCAGACCAAGATATGTTCAGCAAAGACAGTATATATGAAEST: gi|58659406|gb|CK048086.1|CK048086
genomic: CACTTGCTACTGATCAGATGGCTGGATCCGTGGATTCGACATCAGCTAAGgtgctataag ... ccttatgcagGTGCCCTATACGGCAGACCAAGATATGTTCAGCAAAGACAGTATATATGAA
EST: CACTTGCTACTGATCAGATGGCTGGATCCGTGGATTCGACATCAGCTAAG GTGCCCTATACGGCAGACCAAGATATGTTCAGCAAAGACAGTATATATGAA
genomic: CACTTGCTACTGATCAGATGGCTGGATCCGTGGATTCGACATCAGCTAAGgtgctataag ... ccttatgcagGTGCCCTATACGGCAGACCAAGATATGTTCAGCAAAGACAGTATATATGAA
atgcttcttcaaaattagtttgtcactaatctgtgtttatggtctccttatgcagGTGCCCTATACGGCAGACCAAGATATGTTCAGCAAAGACAGTATATATGAAGATTTCTGTGTGGACGATGTTGATCTTAGTTTCGAAAATTATGAGGAAC
cactaat putative branch site (score: 1)
tctccttat putative PPT
ttcaaaattagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccaggacatgctttctctcttaatccacacgtgtgcatgctccatgcttcttcaaaattagtttgtcactaatctgtgtttatggtctccttatgcagGTGCCCTATACGGCAGACCAAGATATGTTCAGCAAAGACAGTATATATGAAGATTTCTGTGTGGACGATGTTGATCTTAGTTTCGAAAATTATGAGGAAC
- - - gacatgc
- - - - - - - - - - - - -tccacac
- - - - - - - - - - - - - - - - - gtgcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt