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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgcttcctaactgtcccctgcctccatactgaatgactgttaatctgttatgacatcaattgtgaaatgtaatctagGTAACTGGTAAGGCTGTTATGCTGGATGAGATAATTAACTATGTTCAATCATTACAGAGGCAGGTTGAGGTATGATGTTTGTAAAACTTGTAGGGCCATT

Basic information

species Oryza sativa
transcript LOC_Os06g16400.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88407735|gb|CI607869.1|CI607869
EST:     TCAGTGAAAGGATGAAATATCTTCAGGATCTTGTTCCTGGTTGTAGTACA                         GTACCTGGTAAGGCTGTTATGCTGGATGAGATAATTAACTATGTTCAATCA
genomic: TCAGTGAAAGGATGAAATATCTTCAGGATCTTGTTCCTGGTTGTAGTAAAgtaagtgctt ... tgtaatctagGTAACTGGTAAGGCTGTTATGCTGGATGAGATAATTAACTATGTTCAATCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatactgaatgactgttaatctgttatgacatcaattgtgaaatgtaatctagGTAACTGGTAAGGCTGTTATGCTGGATGAGATAATTAACTATGTTCAATCATTACAGAGGCAGGTTGAGGTATGATGTTTGTAAAACTTGTAGGGCCATT
               tgttaat  putative branch site (score: 3)
                                          aaatgtaat  TA-rich tract