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...gttgtgtcccggttgcactgaaaaatcgaataggcactaatgatatattgtggttccaaatatatttcttgatgaatttgcttgccttgtgtcggaccagATTACCTGCAGGAATATGCAAAAGGATCCGTCATGTATGGATTCAAGGGAGGTCCAGCTGGAGTCATGAAGTGCAAGTACGTTGAGCTCACTGCGGATTA
species | Oryza sativa |
transcript | LOC_Os06g13810.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCCGGCGGTCAGGCGCCCGGCGGCCACAATGTCATCTGCGGCATCTTCG ATTACCTGCAGGAATATGCAAAAGGAEST: gi|58598594|gb|CK009122.1|CK009122
genomic: CTCCGGCGGTCAGGCGCCCGGCGGCCACAATGTCATCTGCGGCATCTTCGgtgagtgcgc ... gtcggaccagATTACCTGCAGGAATATGCAAAAGGA
EST: CTCCGGCGGTCAGGCGCCCGGCGGCCACAATGTCATCTGCGGCATCTTCG ATTACCTGCAGGAATATGCAAAAGGATCCGTCATGTATGGATTCAAGGGAGEST: gi|218497540|gb|FG953486.1|FG953486
genomic: CTCCGGCGGTCAGGCGCCCGGCGGCCACAATGTCATCTGCGGCATCTTCGgtgagtgcgc ... gtcggaccagATTACCTGCAGGAATATGCAAAAGGATCCGTCATGTATGGATTCAAGGGAG
EST: TCATCTGCGGCATCTTCG ATTACCTGCAGGAATATGCGAAAGGATCCGTCATGTATGGATTCAAGGGAG
genomic: TCATCTGCGGCATCTTCGgtgagtgcgc ... gtcggaccagATTACCTGCAGGAATATGCAAAAGGATCCGTCATGTATGGATTCAAGGGAG
tattgtggttccaaatatatttcttgatgaatttgcttgccttgtgtcggaccagATTACCTGCAGGAATATGCAAAAGGATCCGTCATGTATGGATTCAAGGGAGGTCCAGCTGGAGTCATGAAGTGCAAGTACGTTGAGCTCACTGCGGATTA
tcttgat putative branch site (score: 4)
aaatatatttcttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtgtcccggttgcactgaaaaatcgaataggcactaatgatatattgtggttccaaatatatttcttgatgaatttgcttgccttgtgtcggaccagATTACCTGCAGGAATATGCAAAAGGATCCGTCATGTATGGATTCAAGGGAGGTCCAGCTGGAGTCATGAAGTGCAAGTACGTTGAGCTCACTGCGGATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- tgtgtcc
- - - - -cggttgc
- - - - - - - - - -gaaaaatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgc