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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcatctttttttcagtaatgtgggtgtaatgttgctgtgcaaattaattgaatgtgttactgatctttggtcacattgttcttggttgtttcatttcagGAAGATGTTGAGACTGGAAAAAATGACGGATCTTTGAGTGATGTGGATGCGATGAAG

Basic information

species Oryza sativa
transcript LOC_Os06g06014.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38478126|gb|CF962259.1|CF962259
EST:     TTGATGCTGTTGAGAAGACGATCTCTTCTGAAGATCAGGTTGCAGAGAAG                         GAAGATGTTGAGACTGGAAAAAATGACGGATCTTTGACTGATGTGGATGCG
genomic: TTGATGCTGTTGAGAAGACGATCTCTTCTGAAGATCAGGTTGCAGAGAAGgtatgcatct ... ttcatttcagGAAGATGTTGAGACTGGAAAAAATGACGGATCTTTGAGTGATGTGGATGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattgaatgtgttactgatctttggtcacattgttcttggttgtttcatttcagGAAGATGTTGAGACTGGAAAAAATGACGGATCTTTGAGTGATGTGGATGCGATGAAG
             tactgat  putative branch site (score: 2)
                                            tttcatttc  putative PPT
                                            tttcattt  TA-rich tract