1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcaaccacctctcctcttgatattgatttattagtggaagtttttttttttttactagatggaaggtctgaatttttttttcatttcagGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAG
species | Oryza sativa |
transcript | LOC_Os06g05080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAG GGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGEST: gi|58600462|gb|CK010990.1|CK010990
genomic: TGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGgtcaaccacc ... ttcatttcagGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAG
EST: TGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAG GGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGEST: gi|86822729|gb|CI251809.1|CI251809
genomic: TGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGgtcaaccacc ... ttcatttcagGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAG
EST: TGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCTG GGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAG
genomic: TGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGgtcaaccacc ... ttcatttcagGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAG
tggaagtttttttttttttactagatggaaggtctgaatttttttttcatttcagGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAG
tttttttttcatttc CT-rich tract
tttttttttttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaaccacctctcctcttgatattgatttattagtggaagtttttttttttttactagatggaaggtctgaatttttttttcatttcagGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG