1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaaattattaatattgaacaattcagctgttgctcatagcaaattactgactcaaaaatctaaccactttttccttgaaatcagTGGTCCGAGCTATAGTTCCGAGAATGAATCTTGATGATCTTTTTGAGCAAAAGAATGATGTGGCGAAAGCTGTACTTCAGGAGCTAGAAAAG
species | Oryza sativa |
transcript | LOC_Os06g04460.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTATGAGTTGCAGAATCCCCAACAGCAAATTCAGGCCTACGTCTTTGATG TGGTCCGAGCTATAGTTCCGAGAATGAATCTTGATGATCTTTTTGAGCAAAEST: gi|218489547|gb|FG966244.1|FG966244
genomic: CTATGAGTTGCAGAATCCCCAACAGCAAATTCAGGCCTACGTCTTTGATGgtaaaattat ... ttgaaatcagTGGTCCGAGCTATAGTTCCGAGAATGAATCTTGATGATCTTTTTGAGCAAA
EST: CTATGAGTTGCAGAATCCCCAACAGCAAATTCAGGCCTACGTCTTTGATG TGGTCCGAGCTATAG-TCCGAGAATGAATCTTGATGATCTTTTTGAGCAAAEST: gi|218496061|gb|FG945877.1|FG945877
genomic: CTATGAGTTGCAGAATCCCCAACAGCAAATTCAGGCCTACGTCTTTGATGgtaaaattat ... ttgaaatcagTGGTCCGAGCTATAGTTCCGAGAATGAATCTTGATGATCTTTTTGAGCAAA
EST: CTATGAGTTGCAGAATCCCCAACAGCAAATTCAGGCCTACGTCTTTGATG TGGTCCGAGCTATAGTTCCGAGAATGAATCTTGATGATCTTTATGAGCAAAEST: gi|218488749|gb|FG970419.1|FG970419
genomic: CTATGAGTTGCAGAATCCCCAACAGCAAATTCAGGCCTACGTCTTTGATGgtaaaattat ... ttgaaatcagTGGTCCGAGCTATAGTTCCGAGAATGAATCTTGATGATCTTTTTGAGCAAA
EST: CTATGAGTTGCAGAATCCCCTACAGCTAATTCAGGCCTACGTCTTTGATG TGGTCCGAGCTATAGTTCCGAGAATGAATCTTGATGATCTTTTTGAGCAAA
genomic: CTATGAGTTGCAGAATCCCCAACAGCAAATTCAGGCCTACGTCTTTGATGgtaaaattat ... ttgaaatcagTGGTCCGAGCTATAGTTCCGAGAATGAATCTTGATGATCTTTTTGAGCAAA
ttgctcatagcaaattactgactcaaaaatctaaccactttttccttgaaatcagTGGTCCGAGCTATAGTTCCGAGAATGAATCTTGATGATCTTTTTGAGCAAAAGAATGATGTGGCGAAAGCTGTACTTCAGGAGCTAGAAAAG
ccactttttcctt CT-rich tract
aaaaatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaattattaatattgaacaattcagctgttgctcatagcaaattactgactcaaaaatctaaccactttttccttgaaatcagTGGTCCGAGCTATAGTTCCGAGAATGAATCTTGATGATCTTTTTGAGCAAAAGAATGATGTGGCGAAAGCTGTACTTCAGGAGCTAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT