Sequence
atgc intronic sequence ATGC exonic sequence...tttttcaaggaaaaaaaaagtggtcttgtgaacaccgtggcttctaagggtttgggatgctttcactttacatgacctcactttcattgttctgctgcagGACTTGTTGGCAAAGTGGACTTCACTGTCAGGCATCTTTCTTCAGCAGTTGAGACATTTCCAAATTCATTCACTAGTTTCTCAACTGGTCAACCTTGCAT
Basic information
species | Oryza sativa |
transcript | LOC_Os06g03760.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os06g03760.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM5G871262_T02 (Zea mays), 3'ss of exon 2
tttttcaaggaaaaaaaaagtggtcttgtgaacaccgt---ggcttctaagggtttgggatgctttcactttacatgacctcactttcattgttctgctgcagGACTTGTTGGCAAAGTGGACTTCACTGTCAGGCATCTTTCTTCAGCAGTTGAGACATTTCCAAATTCATTCACTAGTTTCTCAACTGGTCAACCTTGCAT
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--catcaagttcctaactttcagcaatgtcaaaccttttcagttttgtgatggtgtgtgtttacctaagtaggc-tgatcccatctccattttgtcgcttcagGACTTGTTGGTAAAGTGGACTTCACTGTCAGGCACCTATCTTCCTCGGTCCAGACATTTCCAAACTCATTTTCTGGATTCTCAAGTGGCCAGCCGTGCATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58667548|gb|CK056234.1|CK056234EST: GGTCGCCGTCTCCGCGGTGGTTTGCGGCCTCATCCTCGGCATCCTATACG GACTTGTTGGCAAAGTGGACTTCACTGTCAGGCATCTTTCTTCAGCAGTTG
genomic: GGTCGCCGTCTCCGCGGTGGTTTGCGGCCTCATCCTCGGCATCCTATACGgtgcggatca ... tctgctgcagGACTTGTTGGCAAAGTGGACTTCACTGTCAGGCATCTTTCTTCAGCAGTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagggtttgggatgctttcactttacatgacctcactttcattgttctgctgcagGACTTGTTGGCAAAGTGGACTTCACTGTCAGGCATCTTTCTTCAGCAGTTGAGACATTTCCAAATTCATTCACTAGTTTCTCAACTGGTCAACCTTGCAT
acctcac putative branch site (score: 3)
ttgttct putative PPT
tttacat TA-rich tract