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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatcatcccattatattccatttgatgctgcgcaaatctacatgtactgtgtctgagtctggtgtctggtcctaattttcatgtatcaatggctatgcagGTACTCTCTTGGAGCTAAAGCTGATGTGGGTGAACTGAGCTTCTTCTCAGGAGCATCAGGAAACACCAGGGGCTTCACCATTGATTCTCCAACAGATAGC

Basic information

species Oryza sativa
transcript LOC_Os06g02560.3
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g02560.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G119359_T01 (Zea mays), 3'ss of exon 2
-aatcatcccattatattccatttgatgctgcgcaaatctacatgtactgtgtctgagtctggtgtctggtcc-taattttcatgtatcaatggctatgcagGTACTCTCTTGGAGCTAAAGCTGATGTGGGTGAACTGAGCTTCTTCTCAGGAGCATCAGGAAACACCAGGGGCTTCACCATTGATTCTCCAACAGATAGC
 |   ||      |    |       || |  |  | |  | |     |  ||  |   || |||  ||   | || | | |||   | | || || ||||||||| |||||||||||||| | ||||  || || ||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| |||||| |
aagctatagtgccagg--ctgacaagtgttctgtcagttcataatactttcgttggcaacttgtgattgtcacatactatccataactaattgactgtgcagGTACCCTCTTGGAGCTAAATCCGATGCTGGCGAGCTGAGCTTCTTCTCAGGAGCACCAGGGAACTCCAGGGGCTTCACCATTGATTCTCCAGCAGATAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58672000|gb|CK060686.1|CK060686
EST:     GGTGCTGGCTCGTCGCAGTTCCATGTCGACGCACCATCGTACGGCAGCAA                         GTACTCTCTTGGAGCTAAAGCTGATGTGGGTGAACTGAGCTTCTTCTCAGG
genomic: GGTGCTGGCTCGTCGCAGTTCCATGTCGACGCACCATCGTACGGCAGCAAgtatcccctc ... ggctatgcagGTACTCTCTTGGAGCTAAAGCTGATGTGGGTGAACTGAGCTTCTTCTCAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgtgtctgagtctggtgtctggtcctaattttcatgtatcaatggctatgcagGTACTCTCTTGGAGCTAAAGCTGATGTGGGTGAACTGAGCTTCTTCTCAGGAGCATCAGGAAACACCAGGGGCTTCACCATTGATTCTCCAACAGATAGC
                        tcctaat  putative branch site (score: 2)
                           taattttcatgtat  TA-rich tract