1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtatgcttttatttgagaagctaattgcctgatatttaaatggcatgtgttcctgttctcatgaatttcttgctctcagCAGGTTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCTTGCTTTTTGTTTGATCATCCCAAGATTTGGTGCATACTACGCAGTTCTT
species | Oryza sativa |
transcript | LOC_Os06g02550.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGACAATCGGATCTGACATTAGATCTTCATTGTCAGGCTTAATCTCT-- -AGGTTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCTEST: gi|58695956|gb|CK084643.1|CK084643
genomic: TGGACAATCGGATCTGACATTAGATCTTCATTGTCAGGCTTAATCTCTAGgtatgctttt ... ttgctctcagCAGGTTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCT
EST: TGGACAATCGGATCTGACATTAGATCTTCATTGTCAGGCTTAATCTCT-- -AGGTTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCTEST: gi|58610921|gb|CK038633.1|CK038633
genomic: TGGACAATCGGATCTGACATTAGATCTTCATTGTCAGGCTTAATCTCTAGgtatgctttt ... ttgctctcagCAGGTTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCT
EST: TGGACAATCGGATCTGACATTAGATCTTCATTGTCAGGCTTAATCTCTAG --G-TTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCTEST: gi|29679855|gb|CB676130.1|CB676130
genomic: TGGACAATCGGATCTGACATTAGATCTTCATTGTCAGGCTTAATCTCTAGgtatgctttt ... ttgctctcagCAGGTTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCT
EST: TGGACAATCGGATCTGACATTAGATCTTCATTGTCAGGCTTAATCTCTAG --G-TTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCTEST: gi|58693047|gb|CK081734.1|CK081734
genomic: TGGACAATCGGATCTGACATTAGATCTTCATTGTCAGGCTTAATCTCTAGgtatgctttt ... ttgctctcagCAGGTTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCT
EST: TGGACAATCGGATCTGACATTAGATCTTCATTGTCAGGCTTAATCTCTAG CAGGTTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCTEST: gi|29679854|gb|CB676129.1|CB676129
genomic: TGGACAATCGGATCTGACATTAGATCTTCATTGTCAGGCTTAATCTCTAGgtatgctttt ... ttgctctcagCAGGTTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCT
EST: TGGACAATCGGATCTGACATTAGATCTTCATTGTCAGGCTTAATCTCTAG --G-TTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCTEST: gi|58695198|gb|CK083885.1|CK083885
genomic: TGGACAATCGGATCTGACATTAGATCTTCATTGTCAGGCTTAATCTCTAGgtatgctttt ... ttgctctcagCAGGTTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCT
EST: TGGACAATCGGATCTGACATTAGATCTTCATTGTCAGGCTTAATCTCT-- -AGGTTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCT
genomic: TGGACAATCGGATCTGACATTAGATCTTCATTGTCAGGCTTAATCTCTAGgtatgctttt ... ttgctctcagCAGGTTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCT
ttgcctgatatttaaatggcatgtgttcctgttctcatgaatttcttgctctcagCAGGTTCTGGTTTTCTTTACTTCCGTTTGCTCTCTTCTCCCCTACACTGCTTGCTTTTTGTTTGATCATCCCAAGATTTGGTGCATACTACGCAGTTCTT
gcctgat putative branch site (score: 11)
tttcttgctctc putative PPT
tgatatttaaat TA-rich tract