1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtggtttttaggaaacgaataaggcgattttttttgctggtactataattgtgctatcactatcactgaatttgcctcaatatctgaatcattcttgtagATTGCACAAGTTCAGTGCCCCCGTGACACTCACTTTTGGGTTTACCATGATGGTGGCTATGAGGAAGAAGGCCAAAACAATATCAAAGGGAAGATATGGG
species | Oryza sativa |
transcript | LOC_Os06g02130.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTATATGAATGGAAGGGAAATTACCAAGATTGAACTGAGAGTTCTGAAG ATTGCACAAGTTCAGTGCCCCCGTGACACTCACTTEST: gi|29622507|gb|CB627518.1|CB627518
genomic: TTTATATGAATGGAAGGGAAATTACCAAGATTGAACTGAGAGTTCTGAAGgtatcagtgt ... attcttgtagATTGCACAAGTTCAGTGCCCCCGTGACACTCACTT
EST: TTTATATGAATGGAAGGGAAATTACCAAGATTGAACTGAGAGTTCTGAAG ATTGCACAAGTTCAGTGCCCCCGTGACACTCACTTTTGGGTTTACCATGATEST: gi|88334602|gb|CI676384.1|CI676384
genomic: TTTATATGAATGGAAGGGAAATTACCAAGATTGAACTGAGAGTTCTGAAGgtatcagtgt ... attcttgtagATTGCACAAGTTCAGTGCCCCCGTGACACTCACTTTTGGGTTTACCATGAT
EST: TTTATATGAATGGAAGGGAAATTACCAAGATTGAACTGAGAGTTCTGAAG ATTGCACAAGTTCAGTGCCCCCGTGACACTCACTTTTGGEST: gi|88589414|gb|CI707287.1|CI707287
genomic: TTTATATGAATGGAAGGGAAATTACCAAGATTGAACTGAGAGTTCTGAAGgtatcagtgt ... attcttgtagATTGCACAAGTTCAGTGCCCCCGTGACACTCACTTTTGG
EST: TTTATATGAATGGAAGGGAAATTACCAAGATTGAACTGAGAGTTCTGAAG ATTGCACAAGTTCAGTGCCEST: gi|29622064|gb|CB627075.1|CB627075
genomic: TTTATATGAATGGAAGGGAAATTACCAAGATTGAACTGAGAGTTCTGAAGgtatcagtgt ... attcttgtagATTGCACAAGTTCAGTGCC
EST: TTTATATGAATGGAAGGGAAATTACCAAGATTGAACTGAGAGTTCTGAAG ATTGCACAAGTTCAGTGCCCCCGTGACACTCACTTTTGGGTTTACCATGATEST: gi|58592696|gb|CF991004.1|CF991004
genomic: TTTATATGAATGGAAGGGAAATTACCAAGATTGAACTGAGAGTTCTGAAGgtatcagtgt ... attcttgtagATTGCACAAGTTCAGTGCCCCCGTGACACTCACTTTTGGGTTTACCATGAT
EST: TTTATATGAATGGAAGGGAAATTACCAAGATTGAACTGAGAGTTCTGAAG ATTGCACAAGTTCAGTGCCCCCGTGACACTCACTTTTGGGTTTACCATGATEST: gi|88451771|gb|CI694540.1|CI694540
genomic: TTTATATGAATGGAAGGGAAATTACCAAGATTGAACTGAGAGTTCTGAAGgtatcagtgt ... attcttgtagATTGCACAAGTTCAGTGCCCCCGTGACACTCACTTTTGGGTTTACCATGAT
EST: TTTATATGAATGGAAGGGAAATTACCAAGATTGAACTGAGAGTTCTGAAG ATTGCACAAGTTCAGTGCCCCCGTGACACTCACTTTTGGGTTTACCATGAT
genomic: TTTATATGAATGGAAGGGAAATTACCAAGATTGAACTGAGAGTTCTGAAGgtatcagtgt ... attcttgtagATTGCACAAGTTCAGTGCCCCCGTGACACTCACTTTTGGGTTTACCATGAT
taattgtgctatcactatcactgaatttgcctcaatatctgaatcattcttgtagATTGCACAAGTTCAGTGCCCCCGTGACACTCACTTTTGGGTTTACCATGATGGTGGCTATGAGGAAGAAGGCCAAAACAATATCAAAGGGAAGATATGGG
tcattctt CT-rich tract
tgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtttttaggaaacgaataaggcgattttttttgctggtactataattgtgctatcactatcactgaatttgcctcaatatctgaatcattcttgtagATTGCACAAGTTCAGTGCCCCCGTGACACTCACTTTTGGGTTTACCATGATGGTGGCTATGAGGAAGAAGGCCAAAACAATATCAAAGGGAAGATATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA