1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcagtccccctcttctcttctcctccttattcaatctcattccttctcatcggatcgatctcctttcttcacaccagataatcatcttcacttgtacctctagGTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATTGTCAAAGGAGTCTGCTCCAACTTCCTCT
species | Oryza sativa |
transcript | LOC_Os06g01850.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACC GTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATTEST: gi|58695210|gb|CK083897.1|CK083897
genomic: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACCgtcagtcccc ... gtacctctagGTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATT
EST: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACC GTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATTEST: gi|88671055|gb|CI725171.1|CI725171
genomic: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACCgtcagtcccc ... gtacctctagGTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATT
EST: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACC GTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATTEST: gi|88668144|gb|CI722883.1|CI722883
genomic: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACCgtcagtcccc ... gtacctctagGTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATT
EST: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACC GTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATTEST: gi|88955314|gb|CI721886.1|CI721886
genomic: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACCgtcagtcccc ... gtacctctagGTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATT
EST: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACC GTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATTEST: gi|88955313|gb|CI721885.1|CI721885
genomic: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACCgtcagtcccc ... gtacctctagGTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATT
EST: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACC GTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATTEST: gi|33798466|gb|CF325091.1|CF325091
genomic: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACCgtcagtcccc ... gtacctctagGTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATT
EST: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACC GTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATTEST: gi|29685685|gb|CB681960.1|CB681960
genomic: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACCgtcagtcccc ... gtacctctagGTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATT
EST: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACC GTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATTEST: gi|88665792|gb|CI715948.1|CI715948
genomic: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACCgtcagtcccc ... gtacctctagGTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATT
EST: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGAAC GTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATTEST: gi|88670049|gb|CI724165.1|CI724165
genomic: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACCgtcagtcccc ... gtacctctagGTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATT
EST: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGAAC GTTTCACTCTGCGTNAAGAGGCTCGTTTACACCAACGACCAGNGAGAGATT
genomic: TCTACTCCATCGCCAGCAGCGCTCTCGGCGACTTCGGCGACTCCAAGACCgtcagtcccc ... gtacctctagGTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATT
atcggatcgatctcctttcttcacaccagataatcatcttcacttgtacctctagGTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATTGTCAAAGGAGTCTGCTCCAACTTCCTCT
tacctct CT-rich tract
ataatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtccccctcttctcttctcctccttattcaatctcattccttctcatcggatcgatctcctttcttcacaccagataatcatcttcacttgtacctctagGTTTCACTCTGCGTCAAGAGGCTCGTTTACACCAACGACCAGGGAGAGATTGTCAAAGGAGTCTGCTCCAACTTCCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG