1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaacatgccaatgcttggtatatcgaattcaagtgggtacattgatataatttcctttatatcattcctttagcttttgtgcagAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTACCCGATCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTC
species | Oryza sativa |
transcript | LOC_Os06g01260.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCACACTGCAGCTCCTTCATTGCTCTACACAGTG AGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATEST: gi|88368529|gb|CI572738.1|CI572738
genomic: GGCACACTGCAGCTCCTTCATTGCTCTACACAGTGgtaaacatgc ... ttttgtgcagAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGAT
EST: TCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTG AGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATEST: gi|58668349|gb|CK057035.1|CK057035
genomic: TCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGgtaaacatgc ... ttttgtgcagAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGAT
EST: TCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTG AGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGAT
genomic: TCATGCTTATCTCAAGGCACACTGCAGCTCCTTCATTGCTCTACACAGTGgtaaacatgc ... ttttgtgcagAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGAT
caagtgggtacattgatataatttcctttatatcattcctttagcttttgtgcagAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTACCCGATCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTC
cattgat putative branch site (score: 4)
ttcctttagctttt putative PPT
attgatataatttcct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacatgccaatgcttggtatatcgaattcaagtgggtacattgatataatttcctttatatcattcctttagcttttgtgcagAGTTGCAGAGATGAAAGCTGGAAAAGCATGGCGAAGTATTGCATGGAAGATGTACCCGATCTTCTTAAGGATGAGAGTGTAGACAATGTTCCAGCACTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG