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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagcaatactatgatgaatgaaatgaagagtagtagtaggtattattatctgttttggcgaagatttgagacggacggacgctggtctgcttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGTGCAGAAGCCCCTGCTTTACTACGACAACAACCTCATCGGCACCATCACT

Basic information

species Oryza sativa
transcript LOC_Os05g51670.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g51670.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G038598_T03 (Zea mays), 3'ss of exon 2
aagcaatactatgatgaatgaaa-tgaagagtagtagtaggtattattatctgttttggcgaa--gatttgagacggacggacgct---ggtctgcttggc--tgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGTGCAGAAGCCCCTGCTTTACTACGACAACAACCTCATCGGCACCATCACT
           |||||  | ||| |  |   |  | |   || |     ||  |  ||    |  || |    ||  |||| | ||         |||| |  |||||||| ||||||||||| || ||||| ||||| || |||||||| ||||||||||| |||||||| ||||||||||||||||||||  ||||||||||||| 
--------tgttgatgcctaaaaatatatttttttggacagtttccccttcgctcctgagtgactgactgctaacacacggccacttcgaaaaaacttgtcgatgcagGTTCGAGGCTGTCATTCACTTTGCTGGGCTCAAGGCTGTTGGGGAGAGCGTGCACAAGCCCCTACTTTACTACGACAACAACCTGGTCGGCACCATCACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88341083|gb|CI638639.1|CI638639
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATT
EST: gi|58588020|gb|CF986328.1|CF986328
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|86890798|gb|CI303980.1|CI303980
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTG
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTG
EST: gi|33681834|gb|CF310073.1|CF310073
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|11118239|gb|AU163427.1|AU163427
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAG-TGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|88325284|gb|CI675078.1|CI675078
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATCTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|66915947|gb|CX102795.1|CX102795
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTTGCCGG-CTGAAAGCTGTTGGCGAGAGCG
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTT-GCCGGGCTGAAAGCTGTTGGCGAGAGCG
EST: gi|2312051|gb|C28206.1|C28206
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGGCCAAATCTTCTCCTCTCAAAG                         GTTTNAGGCTGTCATCCATTTTTGCCGGGNTTGAAAGCTGTT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTT-GCCGGGCT-GAAAGCTGTT
EST: gi|33680274|gb|CF308513.1|CF308513
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|86894448|gb|CI308225.1|CI308225
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|58690277|gb|CK078964.1|CK078964
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|218487153|gb|FG966807.1|FG966807
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTG
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTG
EST: gi|88340044|gb|CI650491.1|CI650491
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTG
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTG
EST: gi|33798368|gb|CF325041.1|CF325041
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|218494080|gb|FG967420.1|FG967420
EST:     GTTGACCTCCGCGACAAGCAAGCG-TGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33657924|gb|CF280538.1|CF280538
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|29621545|gb|CB626556.1|CB626556
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33685171|gb|CF313410.1|CF313410
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|88444775|gb|CI696203.1|CI696203
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATCTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33680128|gb|CF308367.1|CF308367
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33681916|gb|CF310155.1|CF310155
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33680884|gb|CF309123.1|CF309123
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33683060|gb|CF311299.1|CF311299
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|88414437|gb|CI691602.1|CI691602
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATCTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|88327106|gb|CI652144.1|CI652144
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGA
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGA
EST: gi|88355217|gb|CI651920.1|CI651920
EST:     GTTGACCTCCGCGAAAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCC
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCC
EST: gi|33681687|gb|CF309926.1|CF309926
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|58586418|gb|CF984726.1|CF984726
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33693008|gb|CF321247.1|CF321247
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|218497254|gb|FG946482.1|FG946482
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|88589590|gb|CI705487.1|CI705487
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATCTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33682645|gb|CF310884.1|CF310884
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33680697|gb|CF308936.1|CF308936
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|88326684|gb|CI658407.1|CI658407
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGC
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGC
EST: gi|25798272|gb|CA754233.1|CA754233
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|218479800|gb|FG961978.1|FG961978
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33692560|gb|CF320799.1|CF320799
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33683333|gb|CF311572.1|CF311572
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|88365496|gb|CI680137.1|CI680137
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATCTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|88577618|gb|CI674216.1|CI674216
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATCTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|29684846|gb|CB681121.1|CB681121
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33679540|gb|CF307779.1|CF307779
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGCCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|218480773|gb|FG949192.1|FG949192
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33653585|gb|CF276199.1|CF276199
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|88581448|gb|CI698438.1|CI698438
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAG
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAG
EST: gi|33692738|gb|CF320977.1|CF320977
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33681604|gb|CF309843.1|CF309843
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|218495472|gb|FG969371.1|FG969371
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|218498358|gb|FG945087.1|FG945087
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33692280|gb|CF320519.1|CF320519
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCCGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|58592265|gb|CF990573.1|CF990573
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|86885743|gb|CI309870.1|CI309870
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|218488558|gb|FG963890.1|FG963890
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|88422105|gb|CI688900.1|CI688900
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATCTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33681223|gb|CF309462.1|CF309462
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAACGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|218482145|gb|FG968615.1|FG968615
EST:     CAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCA-TTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: CAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33685111|gb|CF313350.1|CF313350
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33681821|gb|CF310060.1|CF310060
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33685904|gb|CF314143.1|CF314143
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|88587804|gb|CI705579.1|CI705579
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATCTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|87009696|gb|CI310799.1|CI310799
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33688841|gb|CF317080.1|CF317080
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|58590563|gb|CF988871.1|CF988871
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33681511|gb|CF309750.1|CF309750
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|86876782|gb|CI309656.1|CI309656
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|86904873|gb|CI310666.1|CI310666
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|86895042|gb|CI310287.1|CI310287
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGG
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGG
EST: gi|29662182|gb|CB658457.1|CB658457
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33686993|gb|CF315232.1|CF315232
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33684323|gb|CF312562.1|CF312562
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|58657953|gb|CK046633.1|CK046633
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|33693695|gb|CF321934.1|CF321934
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|218501599|gb|FG966518.1|FG966518
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|86901701|gb|CI310463.1|CI310463
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCT
EST: gi|88302441|gb|CI668287.1|CI668287
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGA
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGA
EST: gi|58689696|gb|CK078383.1|CK078383
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
EST: gi|88467105|gb|CI696464.1|CI696464
EST:     GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAG                         GTTTGAGGCTGTCATCCATCTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT
genomic: GTTGACCTCCGCGACAAGCAAGCGTTGGACCAAATCTTCTCCTCTCAAAGgttggttagt ... ttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatctgttttggcgaagatttgagacggacggacgctggtctgcttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGTGCAGAAGCCCCTGCTTTACTACGACAACAACCTCATCGGCACCATCACT
                                        tctgctt  CT-rich tract
               aagattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aagcaatactatgatgaatgaaatgaagagtagtagtaggtattattatctgttttggcgaagatttgagacggacggacgctggtctgcttggctgcagGTTTGAGGCTGTCATCCATTTTGCCGGGCTGAAAGCTGTTGGCGAGAGCGTGCAGAAGCCCCTGCTTTACTACGACAACAACCTCATCGGCACCATCACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
-agcaata
- - - - - -tgatgaa
- - - - - - - - - -gaaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacgctg