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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taaacctgagaatatgaatcgtatcattgttgtcaaaatctatttgtgcctaacttcaattatgcctgtgtattgatatacctgtattgaccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCCTGTGAACTGGACAAATGACACCCTAGACAGCATGAAGGTAGTCCACAGT

Basic information

species Oryza sativa
transcript LOC_Os05g51630.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660843|gb|CB657118.1|CB657118
EST:     AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGG                         GATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
genomic: AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGGgtctgttcct ... ccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
EST: gi|33675058|gb|CF303297.1|CF303297
EST:     AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGG                         GATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
genomic: AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGGgtctgttcct ... ccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
EST: gi|29683379|gb|CB679654.1|CB679654
EST:     AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGG                         GATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
genomic: AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGGgtctgttcct ... ccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
EST: gi|29666785|gb|CB663060.1|CB663060
EST:     AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGG                         GATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC
genomic: AATCATGCAGGCCTTGATTCCGCTGTCTATCTACGGATATACCTAACAGGgtctgttcct ... ccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgcctaacttcaattatgcctgtgtattgatatacctgtattgaccttttacagGATCAAGATATTCGTTCCAATATCAATTTTAGCTTCGCTTGTTCTGTTCCCTGTGAACTGGACAAATGACACCCTAGACAGCATGAAGGTAGTCCACAGT
                                       tattgac  putative branch site (score: 2)
                                             ccttttac  CT-rich tract
                         tattgatata  TA-rich tract