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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtggatgttcgctgcttgcactgcacttcagactggatcacattgatctccgtttcttctcgtggacactgtcaccttgctagctgctgttgactgaatctgtccgcaatgtgcgtgcagAGCCCTACCTGCAGTCCCTAGCGAGAGCTCTGTCGCACTATTACAAGGCACAGTTGCTAATCCTGGATGTCACCGACTTCTCTCTCCGG

Basic information

species Oryza sativa
transcript LOC_Os05g50750.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g50750.3 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G013115_T02 (Zea mays), 3'ss of exon 2
-------------gttcgtggatgttcg-ctgcttgcactgca----cttcagactggatcacattgatctccgtttcttctcgtggacact---gtcaccttgcta-gctgctgttgactgaatctgtccgcaa-tgtgcgtgcagAGCCCTACCTGCAGTCCCTAGCGAGAGCTCTGTCGCACTATTACAAGGCACAGTTGCTAATCCTGGATGTCACCGACTTCTCTCTCCGG
             || ||  | |    | | ||  | ||  ||    |  | |   |   |       |   |      |   |||| ||||    || || || |  |||| ||     |||   |||  ||   |||   ||||||| ||||||||||||| || |||| ||||||||| ||||| | |||||| |  || ||||| ||||| | ||||||||||||||| |||
gttcgtttccgtcgtccgccggtccctggccgcaagaacaacaaccacccccgctcgctgcttgcgtgtgggcagagggtactgtggccacttgtatccccctgtttcgctgatgcatgatgaccttgttggctgctgtctctgcagAGGCCTACCTGCAGTCGCTCGCGAAAGCTCTGTCCCACTACTTCAAGGCGCGCTTACTAATTCTGGACGCCACCGACTTCTCTCTTCGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acactgtcaccttgctagctgctgttgactgaatctgtccgcaatgtgcgtgcagAGCCCTACCTGCAGTCCCTAGCGAGAGCTCTGTCGCACTATTACAAGGCACAGTTGCTAATCCTGGATGTCACCGACTTCTCTCTCCGG
                      tgttgac  putative branch site (score: 3)