1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgcaaaaattactgaatattattgatctctgaagtttgtccaagtgacatttctatgccattttttgttctcctaacaaactcttattattacatgtagATCAAAGCACCTCAGGAAACCAGGCCTCGGCCATTTTATAAACCTGCATTTCGAGGATCTAAGACTGGAG
species | Oryza sativa |
transcript | LOC_Os05g50480.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAG ATCAAAGCACCTCAGGAAACCAGGCCTCGGCCATTTTATAAACCTGCATTTEST: gi|8594718|gb|AU093256.1|AU093256
genomic: ATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAGgtaagcatat ... ttacatgtagATCAAAGCACCTCAGGAAACCAGGCCTCGGCCATTTTATAAACCTGCATTT
EST: ATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAG ATCAAAGCACCTCAGGAAACCAGGCCTCGGCCATTTTATAAACCTGCATTTEST: gi|88311687|gb|CI574904.1|CI574904
genomic: ATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAGgtaagcatat ... ttacatgtagATCAAAGCACCTCAGGAAACCAGGCCTCGGCCATTTTATAAACCTGCATTT
EST: ATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAG ATCAAAGCACCTCAGGAAACCAGGCCTCGGCCATTTTATAAACCTGCATTT
genomic: ATCCTTTTCATGAAGTGAGAAGAAAGCGTGACAAGAAAAAGGAGgtaagcatat ... ttacatgtagATCAAAGCACCTCAGGAAACCAGGCCTCGGCCATTTTATAAACCTGCATTT
tgacatttctatgccattttttgttctcctaacaaactcttattattacatgtagATCAAAGCACCTCAGGAAACCAGGCCTCGGCCATTTTATAAACCTGCATTTCGAGGATCTAAGACTGGAG
tcctaac putative branch site (score: 34)
aaactcttattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcaaaaattactgaatattattgatctctgaagtttgtccaagtgacatttctatgccattttttgttctcctaacaaactcttattattacatgtagATCAAAGCACCTCAGGAAACCAGGCCTCGGCCATTTTATAAACCTGCATTTCGAGGATCTAAGACTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
ttgcaaa
- - - - -ttactga
- - - - - - - - - - - - - - - - - - - - ccaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaact