1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagcatttgctgcttgattttaaatttcttggagctgtacattccatgcttgtcttatgtattttctgactattaatgcagGAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGAAGGTGATGATTTCCACCTCCCAGAAGGGAGACAGAGAGAGCTGGGCTTCA
species | Oryza sativa |
transcript | LOC_Os05g44760.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGTACGAGGAAGTCTCAATTCCACCACATCTGATGGTTGGAACTTCCATG GAAGTGTTTGATTTTATTGCTTCTGCATTGTCACAATTTGTTGATACTGAEST: gi|58676584|gb|CK065271.1|CK065271
genomic: AGTACGAGGAAGTCTCAATTCCACCACATCTGATGGTTGGAACTTCCATGgtaagcattt ... attaatgcagGAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGA
EST: AGTACGAGGAAGTCTCAATTCCACCACATCTGATGGTTGGAACTTCCATG GAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGAAEST: gi|4880012|gb|AU064311.1|AU064311
genomic: AGTACGAGGAAGTCTCAATTCCACCACATCTGATGGTTGGAACTTCCATGgtaagcattt ... attaatgcagGAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGAA
EST: AGTACGAGGAAGTCTCAATTCCACCACATCTGATGGTTGGAACTTCCATG GAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGAAEST: gi|29629656|gb|CB634665.1|CB634665
genomic: AGTACGAGGAAGTCTCAATTCCACCACATCTGATGGTTGGAACTTCCATGgtaagcattt ... attaatgcagGAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGAA
EST: AGTACGAGGAAGTCTCAATTCCACCACATCTGATGGTTGGAACTTCCATG GAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGAAEST: gi|58667655|gb|CK056341.1|CK056341
genomic: AGTACGAGGAAGTCTCAATTCCACCACATCTGATGGTTGGAACTTCCATGgtaagcattt ... attaatgcagGAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGAA
EST: AGTACGAGGAAGTCTCAATTCCACCACATCTGATGGTTGGAACTTCCATG GAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGAAEST: gi|58612363|gb|CK040075.1|CK040075
genomic: AGTACGAGGAAGTCTCAATTCCACCACATCTGATGGTTGGAACTTCCATGgtaagcattt ... attaatgcagGAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGAA
EST: GATGGTTGGAACTTCCATG GAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGAAEST: gi|8404574|gb|AU091928.1|AU091928
genomic: GATGGTTGGAACTTCCATGgtaagcattt ... attaatgcagGAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGAA
EST: AGTACGAGGAAGTCTCAATTNCACCACATCTGATGGTTGGA-CTTCCATG GA-CTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGA-
genomic: AGTACGAGGAAGTCTCAATTCCACCACATCTGATGGTTGGAACTTCCATGgtaagcattt ... attaatgcagGAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGAA
tcttggagctgtacattccatgcttgtcttatgtattttctgactattaatgcagGAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGAAGGTGATGATTTCCACCTCCCAGAAGGGAGACAGAGAGAGCTGGGCTTCA
tattaat putative branch site (score: 13)
ttatgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcatttgctgcttgattttaaatttcttggagctgtacattccatgcttgtcttatgtattttctgactattaatgcagGAACTGTTTGATTTTATTGCTTCTGCATTGTCAAAATTTGTTGATACTGAAGGTGATGATTTCCACCTCCCAGAAGGGAGACAGAGAGAGCTGGGCTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT