1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gcttgcccattcatagttttgaacttgggtttccgaaattcttcttatgtgttccggacatgccctaacttgcgaaaggcaatttttttttgtatcgcagATGCAAGAAGCTCACCTCAGCACGGAAGCAATTGTTTGTCCTTAGGGCACCTAAGGTGCTCGTCATACAACTCAAG
species | Oryza sativa |
transcript | LOC_Os05g43480.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
tatgtgttccggacatgccctaacttgcgaaaggcaatttttttttgtatcgcagATGCAAGAAGCTCACCTCAGCACGGAAGCAATTGTTTGTCCTTAGGGCACCTAAGGTGCTCGTCATACAACTCAAG
ccctaac putative branch site (score: 25)
tttttttttgtatc putative PPT
aatttttttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttgcccattcatagttttgaacttgggtttccgaaattcttcttatgtgttccggacatgccctaacttgcgaaaggcaatttttttttgtatcgcagATGCAAGAAGCTCACCTCAGCACGGAAGCAATTGTTTGTCCTTAGGGCACCTAAGGTGCTCGTCATACAACTCAAG
-cttgccc
- - - - - - - - - - - - - - - - - - - - - tcttatg
- - - - - - - - - - - - - - - - - - - - - - - - -tgttccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaggcaa