Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcacttagcaatgcttaactggttctcagttttctgctatgaggatgtgctggtaacgtaaatttgtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG

Basic information

species Oryza sativa
transcript LOC_Os05g41900.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g41900.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G073535_T01 (Zea mays), 3'ss of exon 3
gtatgcacttag--caatgcttaactggttctcagttttctgctatgaggatgtgctggtaacgtaa---atttgtg-gttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG
||| |     ||  |||||| |  |  | |   |    |    | ||  | |  |  | ||   | |    |||||  | |||||||||||||||| |||||||| ||||| ||||||||||| || ||||||||||||
gtaagatacgagaacaatgcatttcaagcttgtaaaaatggtatctgccggttggtggatatactgatctgtttgtccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAG

upper sequence: LOC_Os05g41900.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G073535_T04 (Zea mays), 3'ss of exon 3
gtatgcacttag--caatgcttaactggttctcagttttctgctatgaggatgtgctggtaacgtaa---atttgtg-gttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG----------------------------------------------
||| |     ||  |||||| |  |  | |   |    |    | ||  | |  |  | ||   | |    |||||  | |||||||||||||||| |||||||| ||||| ||||||||||| || ||||||||||||                                              
gtaagatacgagaacaatgcatttcaagcttgtaaaaatggtatctgccggttggtggatatactgatctgtttgtccgctgcagGTCATTCAGCTCCAAGGTGACCAGCGCAAGAATGTTGCTACTTTCCTAGTTCAGGTATTCAGAATCTTCAGACCTGGCCAGCTGAATACTGTTTTACCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88528638|gb|CI456888.1|CI456888
EST:     ACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: ACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88474396|gb|CI411667.1|CI411667
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|55433785|gb|CV730006.1|CV730006
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88542649|gb|CI471991.1|CI471991
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88522892|gb|CI450688.1|CI450688
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88837315|gb|CI078675.1|CI078675
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88483605|gb|CI420876.1|CI420876
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|89168484|gb|CI038838.1|CI038838
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|58588869|gb|CF987177.1|CF987177
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|33655515|gb|CF278129.1|CF278129
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|55415200|gb|CV727576.1|CV727576
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|396941233|gb|HO188442.1|HO188442
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88519795|gb|CI447449.1|CI447449
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88523460|gb|CI451288.1|CI451288
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|89170606|gb|CI039883.1|CI039883
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88536007|gb|CI465726.1|CI465726
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88326135|gb|CI651190.1|CI651190
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|33655836|gb|CF278450.1|CF278450
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCGTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|33666834|gb|CF297801.1|CF297801
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88276711|gb|CI397513.1|CI397513
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88510334|gb|CI437840.1|CI437840
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88525692|gb|CI452713.1|CI452713
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88515523|gb|CI443177.1|CI443177
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|33677232|gb|CF305471.1|CF305471
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88457932|gb|CI542114.1|CI542114
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATNTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88527920|gb|CI456116.1|CI456116
EST:     AGGAGTTCTGCTGCAATGGTACTNTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88542359|gb|CI471683.1|CI471683
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88533014|gb|CI460545.1|CI460545
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGGCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|86417727|gb|CI031936.1|CI031936
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|14571321|gb|BI118689.1|BI118689
EST:     ACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: ACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|15851156|gb|BI799432.1|BI799432
EST:     ACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: ACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88976349|gb|CI024566.1|CI024566
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|58587133|gb|CF985441.1|CF985441
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88554637|gb|CI484828.1|CI484828
EST:     GTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         TTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTATTT
genomic: GTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88250219|gb|CI348449.1|CI348449
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|38480912|gb|CF965001.1|CF965001
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGT
EST: gi|88531108|gb|CI459555.1|CI459555
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88525786|gb|CI452816.1|CI452816
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88434788|gb|CI548985.1|CI548985
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88516842|gb|CI442498.1|CI442498
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88525732|gb|CI452759.1|CI452759
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|29685126|gb|CB681401.1|CB681401
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88487388|gb|CI424659.1|CI424659
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|58589676|gb|CF987984.1|CF987984
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88545831|gb|CI475419.1|CI475419
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|86260752|gb|CI000200.1|CI000200
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|15852472|gb|BI805268.1|BI805268
EST:     GAGTTCTGCTGCCAATGGTACCTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: GAGTTCTGCTG-CAATGGTA-CTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88531325|gb|CI459794.1|CI459794
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|89171918|gb|CI040428.1|CI040428
EST:     TCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: TCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|29687847|gb|CB684122.1|CB684122
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|86526797|gb|CI167003.1|CI167003
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88548366|gb|CI476730.1|CI476730
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88466983|gb|CI539779.1|CI539779
EST:     TTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: TTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88558042|gb|CI488500.1|CI488500
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACNTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|33671943|gb|CF300182.1|CF300182
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|58591899|gb|CF990207.1|CF990207
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATC
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATC
EST: gi|88503700|gb|CI431206.1|CI431206
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88545068|gb|CI474602.1|CI474602
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88480419|gb|CI417690.1|CI417690
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|29687846|gb|CB684121.1|CB684121
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88481051|gb|CI418322.1|CI418322
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88528185|gb|CI454405.1|CI454405
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|55415300|gb|CV727676.1|CV727676
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88469607|gb|CI406878.1|CI406878
EST:     AGGAGTTCTGCTGCAATGGTACCGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88546764|gb|CI474436.1|CI474436
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|58607649|gb|CK035682.1|CK035682
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88527204|gb|CI455335.1|CI455335
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTNCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88517184|gb|CI444838.1|CI444838
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|14713839|gb|AU197801.1|AU197801
EST:     AGGAGTTNTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCNCGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|55435828|gb|CV731050.1|CV731050
EST:     AGGAGTTTTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88988131|gb|CI036101.1|CI036101
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|89170998|gb|CI040275.1|CI040275
EST:     GGTACTGTAGTCCCAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: GGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88550360|gb|CI480327.1|CI480327
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|33692899|gb|CF321138.1|CF321138
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|89198573|gb|CI016658.1|CI016658
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88521657|gb|CI449365.1|CI449365
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
EST: gi|88253972|gb|CI352598.1|CI352598
EST:     AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAG                         GTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT
genomic: AGGAGTTCTGCTGCAATGGTACTGTAGTCCAAGATCCAGAGCTTGGCCAGgtatgcactt ... gtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttctcagttttctgctatgaggatgtgctggtaacgtaaatttgtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG
                              tggtaac  putative branch site (score: 2)
                                      taaatttgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgcacttagcaatgcttaactggttctcagttttctgctatgaggatgtgctggtaacgtaaatttgtggttgcagGTCATTCAGCTTCAAGGTGATCAGCGTAAGAATGTTGCCACGTTCCTAGTTCAG

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