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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgcggattcagattctcttgcagatttgttattatcattcagcgtgttattactgttacgcgaaatctgcggtttcggcttggctgattcgttggttcttgggtcgtcgccttgtcgcaggacaagGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG

Basic information

species Oryza sativa
transcript LOC_Os05g39960.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g39960.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM5G827266_T03 (Zea mays), 3'ss of exon 2
gttcgcggattcagattctcttgcagatttgttattatcattcagcg-tgttattactgttacgcgaaatctgcggtttcggcttggctgattcgttggttcttgggtcgtcgc-cttgtcgcaggacaagGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG-----
                                        |   | | ||     || ||  |      | | |  | |    ||  | |  | || |  || | | || |    || ||  ||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || |||||| |||| |     
---------------------------------------gtgaggagatgcctccacagtcgcctttctttttc--tcttcatttacccgtgtggtggagtccttgatcttgatgctcgttacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAACAGGCGGCCATCAGGGACGTCCAGGAAGCATGCGTCTATGATGGTAAA

upper sequence: LOC_Os05g39960.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM5G827266_T02 (Zea mays), 3'ss of exon 2
gttcgcggattcagattctcttgcagatttgttattatcattcagcg-tgttattactgttacgcgaaatctgcggtttcggcttggctgattcgttggttcttgggtcgtcgc-cttgtcgcaggacaagGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG
                                        |   | | ||     || ||  |      | | |  | |    ||  | |  | || |  || | | || |    || ||  ||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||| |||||||| || |||||| |||| |
---------------------------------------gtgaggagatgcctccacagtcgcctttctttttc--tcttcatttacccgtgtggtggagtccttgatcttgatgctcgttacagGACAAGGCGATCAAGAGGTTTCAGGTGAGGAACATCGTGGAACAGGCGGCCATCAGGGACGTCCAGGAAGCATGCGTCTATGATG

upper sequence: LOC_Os05g39960.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA02G40660.1 (Glycine max), 3'ss of exon 2
gttcgcggattcagattctcttgcagatttgttattatcattcagcgtgttattactgttacgcgaaatctgcggtttcggcttggctgattcgttggttcttgggtcgtcgccttgtcgcaggacaagGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG
             | || | || ||  ||| |  | | | ||||   | || ||  | ||     |    |     ||   |||       |   ||  |         |          ||||||||||||||||||||||| | |||||||||||| || || ||||| ||  |||| ||||| ||||| || || ||| ||||  
-------------gtttttatttcac-tttctcttaaaccttcaattt-tttttttttttgttttaggcgtttcaattgacctttttacgctttgtgaataaaaaaatattattaaaaaacagGACAAGGCCATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCTTGTGTCTATGAAC

upper sequence: LOC_Os05g39960.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA04G39940.1 (Glycine max), 3'ss of exon 2
gttcgcggattcagattctcttgcagatttgttattatcattcagcgtgttattactgttacgcgaaatctgcggtttcggcttggctgattcgttggttcttgggtcgtcgccttgtcgcaggacaagGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG
               ||||  |     ||| ||   | | |||    | || ||| | ||| |||  |  | |  ||   | ||          |||    ||| |        |  |  ||||||||||| ||||||||||| | |||||||||||| || || ||||| ||  |||| ||||| |||||||| || ||| | ||  
--------------gttcttatttcactttctt--caaccttccttttttttttatttttatgcggcaatt-caattaaagatt----------ttgagatttgtgaaaaaaattaataacagGACAAGGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAGGCTTGTGTCTACGAAC

upper sequence: LOC_Os05g39960.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA05G21370.1 (Glycine max), 3'ss of exon 2
gttcgcggattcagattctcttgcagatttgttattatcattcagcgtgttattactgttacgcg-aaatctgcggtttcggcttggctgattcgttggttcttgggtcgtcgccttgtcg--caggacaagGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG
                              ||||||||| |    ||  || || ||   ||    | || || |        ||      |||  |    |||  ||  |||||  ||    ||||||||||||||||||||||| |  ||||||||||| || || ||||| ||  |||| ||||| ||||| || || ||| ||||  
------------------------------gttattatc-tatttcgctttcttccttccaccttcagatttgtgcgaggcatttcaaattttcaattaaccttttgtgctcgccccgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC

upper sequence: LOC_Os05g39960.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA17G18200.1 (Glycine max), 3'ss of exon 2
gttcgcggattcagattctcttgcagatttgttattatcatt-cagcgtgttattactgttacgcg-aaatctgcg------gtttcggcttggctgattcgttggttcttgggtcgtcgccttgtcgcaggacaagGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG
               || | ||  |  ||| |||||||||||    ||  || || ||   ||    | || || |       ||||   ||     |    |    | ||| |    | |  ||   ||||||||||||||||||||||| |  ||||||||||| || || ||||| ||  |||| ||||| ||||| || || ||| ||||  
--------------gtttttttttat-tttattattatcattatttcgctttctttcttccaccttcagatttgtgcgaggcatttcaattt--tcaacaactaaccttttgtgctcgctctgtgaaacagGACAAGGCCATCAAGAGGTTTCTTGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC

upper sequence: LOC_Os05g39960.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA06G14950.1 (Glycine max), 3'ss of exon 2
gttcgcggattcagattctcttgcagatttgttattatcattcagcgtgttattactgttacgcgaaatctgcggtttcggcttggctgattcgttggttcttgggtcgtcgccttgtcgcaggacaagGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG
         |||   ||||  |     ||| |||  | | ||||     || ||  |  | ||  || ||      ||    || || |||| ||       |              |  ||||||||||| ||||||||||| | |||||||||||| || || ||||| ||  |||| ||||| |||||||| || ||| ||||  
--------gttcg--ttcttatttcactttctta--aacgttcaa---atttttttttctgcggcaattcaattaatttttttttgc-gatttgtaaaaaaataaaataata----ataacagGACAAGGCTATCAAGAGGTTTCTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTTCAGGAGGCTTGTGTCTATGAAC

upper sequence: LOC_Os05g39960.2 (Oryza sativa), 3'ss of exon 2
lower sequence: AT2G40510.1 (Arabidopsis thaliana), 3'ss of exon 2
gttcgcggattcagattctcttgcagatttgttatt--atcattcagcgtgttattactgttacgcgaaatctgcggtttcggcttggctgattcgttggttcttgggtcgtcgccttgtcgcaggacaagGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG
              | |||||| ||  ||   |  |  |||| |||   |    | | | ||| | | | | ||   |||   ||||        | |||||||    |  |    |||    ||||||||||||| |||||||||   ||||||||||| || |||||||| || || || ||||| ||||| ||  ||||| |||| |
------------gtactctctttcaccttctcttctcaatcaatcaatctccagtaattcttatgtgtattttg--atttgatcttg-------tggtggttctataataat----ttgggatagGACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG

upper sequence: LOC_Os05g39960.2 (Oryza sativa), 3'ss of exon 2
lower sequence: AT2G40590.1 (Arabidopsis thaliana), 3'ss of exon 2
gttcgcggattcagattctcttgcagatttgttattatcattcagcgtgttattactgttacgcgaaatctgcggtttcggcttggctgattcgttggttcttgggtcgtcgccttgtcgcaggacaagGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG
      | | ||   | ||| | |   | |  |   |||| |||   |    | |||  || | | |         ||  | || | |  |  | ||||  |       |    |||    ||||||||||||| |||||||||   ||||||||||| || |||||||| || || || ||||| ||||| ||  ||||| |||| |
------gtactctcttcctccttc---tcttctccaatcaatcaatctccagtaactcctatgtgga---------ttttgattagatcttgtggtggtaat------ataaatttgg-atagGACAAGGCCATTAAGAGGTTCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGG

upper sequence: LOC_Os05g39960.2 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv13s0067g02700.t01 (Vitis vinifera), 3'ss of exon 3
gttcgcggattcagattctcttgcagatttgttattatcattcagcgtgttattactgttacgcgaaatctgcggtttcggcttggctgattcgttggttcttgggtcgtcgccttgtcgcaggacaagGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG
                  ||| ||    ||  |||| | ||| || |  ||     |||  |     ||| |  |||            ||| ||  ||  ||||    | |  |  |  ||||||||||| |||||||||||   ||||||||||||||| ||||| || ||  | |||||||| |||||||| |||||| ||||| 
-----------------gtctcgctccatttgtattctgatttagtggttt-----tgtatcaaagcatcagtagttg----------aattggtgcgtgtttgga--attgtgtgat--cagGACAAGGCAATCAAGAGGTTTTTGGTGAGGAACATCGTGGAGCAAGCTGCAGTGAGGGATGTTCAGGAGGCCTGCGTCTATGACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88360030|gb|CI608544.1|CI608544
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88723231|gb|CI746741.1|CI746741
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88341380|gb|CI635578.1|CI635578
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88587407|gb|CI705151.1|CI705151
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88344573|gb|CI637182.1|CI637182
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88302196|gb|CI668042.1|CI668042
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|33673001|gb|CF301240.1|CF301240
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|87006646|gb|CI295029.1|CI295029
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88578930|gb|CI687892.1|CI687892
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88721116|gb|CI744415.1|CI744415
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88348591|gb|CI634186.1|CI634186
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88744313|gb|CI767673.1|CI767673
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88312271|gb|CI582609.1|CI582609
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88290468|gb|CI665257.1|CI665257
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88341572|gb|CI641324.1|CI641324
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88741737|gb|CI765245.1|CI765245
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88382376|gb|CI633234.1|CI633234
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88735170|gb|CI758678.1|CI758678
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88734556|gb|CI758064.1|CI758064
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88738786|gb|CI762294.1|CI762294
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88734944|gb|CI758452.1|CI758452
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|86906476|gb|CI294599.1|CI294599
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88310420|gb|CI659210.1|CI659210
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88310717|gb|CI672581.1|CI672581
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88717091|gb|CI740601.1|CI740601
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88344564|gb|CI637173.1|CI637173
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88582603|gb|CI700023.1|CI700023
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|33673781|gb|CF302020.1|CF302020
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88695095|gb|CI739133.1|CI739133
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88344156|gb|CI626700.1|CI626700
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88326284|gb|CI660105.1|CI660105
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88731774|gb|CI753494.1|CI753494
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88370909|gb|CI595021.1|CI595021
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88400687|gb|CI596108.1|CI596108
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88745168|gb|CI768528.1|CI768528
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88744906|gb|CI768266.1|CI768266
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88378907|gb|CI681729.1|CI681729
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88332889|gb|CI639737.1|CI639737
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88732825|gb|CI756002.1|CI756002
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88742314|gb|CI765822.1|CI765822
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88326531|gb|CI644634.1|CI644634
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88326013|gb|CI651061.1|CI651061
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88394466|gb|CI605807.1|CI605807
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88342871|gb|CI640204.1|CI640204
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|55413111|gb|CV725487.1|CV725487
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88739312|gb|CI762820.1|CI762820
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88340758|gb|CI636918.1|CI636918
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88307818|gb|CI646253.1|CI646253
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAG                         GACAAGGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCC
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGgttcgcggat ... gcaggacaagG-C----C-ATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCC
EST: gi|88333285|gb|CI642322.1|CI642322
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88400908|gb|CI616913.1|CI616913
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88570576|gb|CI661949.1|CI661949
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88294257|gb|CI667231.1|CI667231
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|55434460|gb|CV730354.1|CV730354
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88371711|gb|CI680817.1|CI680817
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88743449|gb|CI766957.1|CI766957
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|33825638|gb|CF338632.1|CF338632
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88735578|gb|CI759086.1|CI759086
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|88734616|gb|CI758124.1|CI758124
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg
EST: gi|86899956|gb|CI300082.1|CI300082
EST:     GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTGCCCCAAGGACAAG                    
genomic: GCCATGTGAAGTACATCCGCTGCTCCAACTGCGCCAAGTGCTG-CCC-----CAAGgttcgcggat ... gcagg


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttcggcttggctgattcgttggttcttgggtcgtcgccttgtcgcaggacaagGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG
          ggctgat  putative branch site (score: 4)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcgcggattcagattctcttgcagatttgttattatcattcagcgtgttattactgttacgcgaaatctgcggtttcggcttggctgattcgttggttcttgggtcgtcgccttgtcgcaggacaagGCCATCAAGAGGTTCCAGGTGAGGAACATCGTCGAGCAGGCGGCCATCAGGGATGTCCAGGAGGCGTGCGTCCATGACG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG