1 5' 3' | 2 5' 3' | 3 5' 3' |
...taatttataaaaatatcttttgtccatccaaaagacaattcaatagattctatgctttgcatctgcaggttacactgatagtttgagtaacattttgtagGGGGACTGCAATGACTATGAAGCGCATGCTGGAAACATCATTTCCAGGCATTCATGTTATCTTGCACAATTACCCTCCACCCTTCCCCAAACGTGTACTT
species | Oryza sativa |
transcript | LOC_Os05g39110.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGATATGGCACCACCGGCGAGCTGCAATTCTGCGCCTCCTGCTCGTACAA GGGGACTGCAATGACTATGAAGCGCATGCTGGAAACATCATTTCCAGGCATEST: gi|163921094|gb|EG714093.1|EG714093
genomic: GGATATGGCACCACCGTCGAGCTGCAATTCTGCGCCTCCTGCTCGTACAAgtgagtttcg ... cattttgtagGGGGACTGCAATGACTATGAAGCGCATGCTGGAAACATCATTTCCAGGCAT
EST: GGATATGGCACCACCGTCGAGCTGCAATTCTGCGCCTCCTGCTCGTACAA GGGGACTGCAATGACTATGAAGCGCATGCTGGAAACATCATTTCCAGGCATEST: gi|163926652|gb|EG713668.1|EG713668
genomic: GGATATGGCACCACCGTCGAGCTGCAATTCTGCGCCTCCTGCTCGTACAAgtgagtttcg ... cattttgtagGGGGACTGCAATGACTATGAAGCGCATGCTGGAAACATCATTTCCAGGCAT
EST: GGATATGGCACCACCGTCGAGCTGCAATTCTGCGCCTCCTGCTCGTACAA GGGGACTGCAATGACTATGAAGCGCATGCTGGAAACATCATTTCCAGGCAT
genomic: GGATATGGCACCACCGTCGAGCTGCAATTCTGCGCCTCCTGCTCGTACAAgtgagtttcg ... cattttgtagGGGGACTGCAATGACTATGAAGCGCATGCTGGAAACATCATTTCCAGGCAT
gattctatgctttgcatctgcaggttacactgatagtttgagtaacattttgtagGGGGACTGCAATGACTATGAAGCGCATGCTGGAAACATCATTTCCAGGCATTCATGTTATCTTGCACAATTACCCTCCACCCTTCCCCAAACGTGTACTT
gagtaac putative branch site (score: 38)
taacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatttataaaaatatcttttgtccatccaaaagacaattcaatagattctatgctttgcatctgcaggttacactgatagtttgagtaacattttgtagGGGGACTGCAATGACTATGAAGCGCATGCTGGAAACATCATTTCCAGGCATTCATGTTATCTTGCACAATTACCCTCCACCCTTCCCCAAACGTGTACTT
- - - - aaaaata
- - - - - - - -tcttttg
- - - - - - - - - - - tccatcc
- - - - - - - - - - - - - - -aaaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgcagg