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gtaaaagaaatccatttttttgatcttgtgagctgttctgcaatggctatgtagtgttggatatgttggcaggtgcctaaccaaagaaaagtggcaatgcagGTTAAGGAACTGAACTCTTTAGGATACGAAGTGATTTTGGTCACCTCAGGTGCTGTTGGAGTGGGGCGACAGCGACTTAGGTACCGGAAGCTTGTCAATA
species | Oryza sativa |
transcript | LOC_Os05g38150.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACAACATGGAAGATTGGCTTTGGGCAGGGTTGGAGCTCTGTGCGAGCAG GTTAAGGAACTGAACTCTTTAGGATACGAAGTGATTTTGGTCACCTCAGGTEST: gi|86890511|gb|CI303872.1|CI303872
genomic: GACAAGATGGAAGATTGGCTTTGGGCAGGGTTGGAGCTCTGTGCGAGCAGgtaaaagaaa ... ggcaatgcagGTTAAGGAACTGAACTCTTTAGGATACGAAGTGATTTTGGTCACCTCAGGT
EST: GACAAGATGGAAGATTGGCTTTGGGCAGGGTTGGAGCTCTGTGCGAGCAG GTTAAGGAACTGAACTCTTTAGGATACGAAGTGATTTTGGTCACCTCAGGTEST: gi|88427440|gb|CI571643.1|CI571643
genomic: GACAAGATGGAAGATTGGCTTTGGGCAGGGTTGGAGCTCTGTGCGAGCAGgtaaaagaaa ... ggcaatgcagGTTAAGGAACTGAACTCTTTAGGATACGAAGTGATTTTGGTCACCTCAGGT
EST: GACAAGATGGAAGATTGGCTTTGGGCAGGGTTGGAGCTCTGTGCGACCAG GTTAAGGAACTGAACTCTTTAGGATACGAAGTGATTTTGGTCACCTCAGGT
genomic: GACAAGATGGAAGATTGGCTTTGGGCAGGGTTGGAGCTCTGTGCGAGCAGgtaaaagaaa ... ggcaatgcagGTTAAGGAACTGAACTCTTTAGGATACGAAGTGATTTTGGTCACCTCAGGT
tatgtagtgttggatatgttggcaggtgcctaaccaaagaaaagtggcaatgcagGTTAAGGAACTGAACTCTTTAGGATACGAAGTGATTTTGGTCACCTCAGGTGCTGTTGGAGTGGGGCGACAGCGACTTAGGTACCGGAAGCTTGTCAATA
gcctaac putative branch site (score: 42)
aaagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaagaaatccatttttttgatcttgtgagctgttctgcaatggctatgtagtgttggatatgttggcaggtgcctaaccaaagaaaagtggcaatgcagGTTAAGGAACTGAACTCTTTAGGATACGAAGTGATTTTGGTCACCTCAGGTGCTGTTGGAGTGGGGCGACAGCGACTTAGGTACCGGAAGCTTGTCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG