1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ggctggtctgcattatacatttgctgttattatgctcaggttattcatcattatccacaaatatgttttttcttctttgcaaatattctccttttcccagAGCCGCATTGGACTCCAATACAAGAGTCAGAGGGTGGAAGCAAAGAAATCGTAGTAAATGATCTCTACTGGCCTCTGTAGCCAAAGGATTCAGCAAATCT
species | Oryza sativa |
transcript | LOC_Os05g37170.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACTTCAAATTTCTACAACTTCGTGTGAAGTGAAATGGTTAAGATGCAAG AGCCGCATTGGACTCCAATACAAGAGTCAGAGGGTGGAAGCAAAGAAATCGEST: gi|88429077|gb|CI689957.1|CI689957
genomic: AACTTCAAATTTCTACAACTTCGTGTGAAGTGAAATGGTTAAGATGCAAGgtttgatctc ... cttttcccagAGCCGCATTGGACTCCAATACAAGAGTCAGAGGGTGGAAGCAAAGAAATCG
EST: AACTTCAAATTTCTACAACTTCGTGTGAAGTGAAATGGTTAAGATGCAAG AGCCGCATTGGACTCCAATACAAGAGTCAGAGGGTGGAAGCAAAGAAATCG
genomic: AACTTCAAATTTCTACAACTTCGTGTGAAGTGAAATGGTTAAGATGCAAGgtttgatctc ... cttttcccagAGCCGCATTGGACTCCAATACAAGAGTCAGAGGGTGGAAGCAAAGAAATCG
catcattatccacaaatatgttttttcttctttgcaaatattctccttttcccagAGCCGCATTGGACTCCAATACAAGAGTCAGAGGGTGGAAGCAAAGAAATCGTAGTAAATGATCTCTACTGGCCTCTGTAGCCAAAGGATTCAGCAAATCT
tattctccttttccc CT-rich tract
aaatatgttttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggctggtctgcattatacatttgctgttattatgctcaggttattcatcattatccacaaatatgttttttcttctttgcaaatattctccttttcccagAGCCGCATTGGACTCCAATACAAGAGTCAGAGGGTGGAAGCAAAGAAATCGTAGTAAATGATCTCTACTGGCCTCTGTAGCCAAAGGATTCAGCAAATCT
- - - tctgcat
- - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - -ttatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccacaaa