Sequence
atgc intronic sequence ATGC exonic sequence...acatcttgcttctgtcttctttctttgtctacatttttgcaacctcttgaggaaaagagagcgattgacaaggcctttaattccatttgtatgtatgcagCAGCAGGATATCTTGCAGCTAGGCCCCCCACACTGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGT
Basic information
species | Oryza sativa |
transcript | LOC_Os05g37170.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os05g37170.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G000842_T02 (Zea mays), 3'ss of exon 3
---------------acatcttgcttctgtcttctttctttgtctacatttttgcaacctcttgaggaaaagagagcgattgacaaggcctttaattccatttgtatgtatgcagCAGCAGGATATCTTGCAGCTAGGCCCCCCACACTGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGT
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aggctgcagagtcggacaccccactcctctcttccacctctgtc--cgatcttgccgcctcttggagagaaaaga-------------cctttaattccatttgtatgtatgcagCAGCTGGATACCTTGCAGCTAGGCCCCCCACACTGGAGATCTTCCCTTCATGGCCAATGAGTCATCTACAGCAGCCATACAGT
upper sequence: LOC_Os05g37170.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA12G30990.1 (Glycine max), 3'ss of exon 3
acatcttgcttctgtcttctttctttgtctacatttttgcaacctcttgaggaaaagagagcgattgacaaggcctttaattccatttgtatgtatgcagCAGCAGGATATCTTGCAGCTAGGCCCCC---CACACTGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGT
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ctgtcataattgaaagtcctcatggtcttt-tattttggtaa--tcttcaactccttcaacttggtgatcctcttacagattttgcttttgtgattcttgcagCTTTAT---TCACAGCCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCCAAGA---
upper sequence: LOC_Os05g37170.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA12G09430.2 (Glycine max), 3'ss of exon 2
---acatcttgcttctgtcttctttctttgtctacatttttgcaacctcttgaggaaaagagagcgattgacaaggccttta-attccatttgtatgtatgcagCAGCAGGATATCTTGCAGCTAGGCCCCC---CACACTGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGT
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ttgaaaaggaggataaggttcctccaccttttcatatgattga----tgttcataaagcctttatttttggtgatcctctgagattttccttttgtgattgtagCAGCTTTAT---TCACAGGCAGGCCTTCGGCCACACTGGAAATGTTCCCCTCATGGCCAATGAGATTCCAGCAAACCTCAAGA---
upper sequence: LOC_Os05g37170.3 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA12G09430.3 (Glycine max), 3'ss of exon 3
acatcttgcttctgtcttctttctttgtctacatttttgcaacctcttgaggaaaagagagcgattgacaaggccttta-attccatttgtatgtatgcagCAGCAGGATATCTTGCAGCTAGGCCCCC---CACACTGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGT
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aaaaggaggataaggttcctccaccttttcatatgattga----tgttcataaagcctttatttttggtgatcctctgagattttccttttgtgattgtagcagCTTTAT---TCACAGGCAGGCCTTCGGCCACACTGGAAATGTTCCCCTCATGGCCAATGAGATTCCAGCAAACCTCAAGA---
upper sequence: LOC_Os05g37170.3 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv06s0080g00360.t01 (Vitis vinifera), 3'ss of exon 3
acatcttgcttctgtcttctttctttgtctacatttttgcaacctcttgaggaaaagagagcgattgacaaggcctttaa--ttccatttgtatgtatgcagCAGCAGGATATCTTGCAGCTAGGCCCCC---CACACTGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGT
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--aaggggattaggt-tcctctcccttttgatattttgaaaa--tcttgggggagtcttttattttgcctgatactcagagattttgcttttgtgattcttgcagCTTTAT---TCACAGCCAGGCCTGCAGCTACTCTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAA-ACCCAAAGA--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58688746|gb|CK077433.1|CK077433EST: TGGTGCTGGTGTCGATCATGGCATGATCCAAAGTGACGCGTACACAGAGT CAGCAGGATATCTTGCAGCTAGGCCCCCCACACTGGAAATCTTCCCTTCAT
genomic: TGGTGCTGGTGTCGATCATGGCATGATCCAAAGTGACGCGTACACAGAGTgtaagactgc ... atgtatgcagCAGCAGGATATCTTGCAGCTAGGCCCCCCACACTGGAAATCTTCCCTTCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgaggaaaagagagcgattgacaaggcctttaattccatttgtatgtatgcagCAGCAGGATATCTTGCAGCTAGGCCCCCCACACTGGAAATCTTCCCTTCATGGCCAATGAGTCATCTACAGGAGCCATACAGT
tttaatt TA-rich tract