Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggttatcctgaacttagtcttttcagcaaagcggtatgttcctcatagcttaacggatcaccttcctaatgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG

Basic information

species Oryza sativa
transcript LOC_Os05g36290.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G126010_T03 (Zea mays), 3'ss of exon 1
gtggttatcctgaactta-gtcttttc-agcaaagcggtatgttcctcatagcttaacggat---caccttcctaatgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG
|| ||||||  |  |  | |||||||| | ||||||         |   |  | |||  | |   || || |  ||| |||| ||||| ||||| |||||||||||||| ||||| || |||||||| |||||||| || |||||||| ||||||||||||||||| || ||||||||||||||||
gttgttatctcgttcagaagtcttttccaacaaagcaactctactcctgtgacctaattgttgctcaactcctcaatattta-cagGCCGGTTTCGCTGGTGATGATGCGCCAAGAGCTGTCTTCCCCAGCATTGTGGGAAGACCACGCCACACCGGTGTCATGGTCGGCATGGGCCAAAAGGATG

upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 2
gtggttatcctg-aacttagtcttttcagcaaagcggtat--gttcctcatagctt--------aacggatcaccttcctaatgttta----acagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG
||   ||   || |  ||  ||| ||  |   |   | ||   ||  ||   | ||        ||||  | |  |   ||||| |      ||||||||| ||||||||||||||||| || ||||| || || || || ||||| ||  |||| ||||| || ||||| |||||||||||||| ||||||||||
gttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTTGGCCGACCTCGTCATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
gtggtta--tcctgaacttagtcttttcagcaaagcggtatgttcctcatagctt----aacggatcacct-tcctaatgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG
||   ||  || || | ||    |||   |||      ||||    || |   ||    |  | || |  | |  |||| |  |||||||||| ||||||||||| ||||| || ||||| ||||| || || ||||| ||  |||| || || || ||||| |||||||||||||| ||||||||||
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtgaataatttattttaatatggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 2
-----------gtggttatcc-tgaacttagtcttttcagcaaagcggtatgttcctcatagcttaacggatcaccttcctaatgttta-acagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG-
           |  |||     | |   || |    ||     ||   |   ||| | || ||| ||   ||     |  | || | |  ||||||||| ||||||| ||| ||||| || ||||| || || || || ||||| ||  |||| ||||| || ||||| |||||||||||||| |||||||||| 
gttagtactttgcagtttcttgttagtgtaattgcatctatttagtcttggtttcattattgctcaatttatttaaatgatcatctgtgtacagGCAGGATTTGCTG-TGACGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTTGGTCGACCTCGTCATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATGC

upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 2
----------------------------------gtggttatcctgaacttagtcttttcagcaaagcg-gtatgttcctcatagcttaacggatcaccttcctaatgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG
                                   | ||  |  |||| |      ||    |   ||  |  |     | |||     |   ||    |  | |||||||  ||||| |||||||| |||||||| || || |||||||| ||||| || ||| | ||| ||||||| || |||||||| |||||||||||||| || |||||||
gttagaacatgttttttccaattgatgagtgcttcttgtgctattgaagtagacagttcgctctgtgcttgcttaaatatgatattaatatatattttttctccaatgtttg-cagGCGGGTTTTGCAGGTGATGACGCTCCTAGGGCCGTGTTCCCCAGTATTATTGGGCGACCACGCCATACCGGTGTAATGGTTGGGATGGGTCAGAAGGATG

upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
---------------------------------------------gtggttatcctgaacttagtcttttcagcaaagcggtatgttcctcatagc-ttaacggat-caccttcct-aatgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG
                                               |   |   |  |||  ||  || |     |    | ||||    ||    || |   ||  |  || ||  ||||||  ||||| |||||||| ||||||||||| || |||||||| ||||| |||||| | ||||||||||| || || ||||| |||||||||||||| || |||||||
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcat-tgttaaatatgatattgatatatatatttttctcgatgtttg-cagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG

upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
gtggttatcctg-aacttagtcttttcagcaaagcggt-atgttcctcatagctt---------aacggatcacct--tcctaatgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG
||   ||    |   ||| || ||||     | | | |  ||   ||  |||| |         ||| ||     |  |  |||| |  ||||||| || ||||||||||||||||| || ||||| ||||| || || ||||| ||  |||| || ||||| ||||| |||||||||||||| ||||||||||
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 2
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 2
----------gtggttatcctga-acttagtcttttcagcaaagcggtatgttcct-catagcttaacggatcaccttcctaatgt-ttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG
           || ||||   || |||   |  ||  | |         ||| | |   ||     || |||||   |  |  | | ||||||||| |||||||||||||||||||| || || || || ||||| || ||||| ||  | ||  | ||||| |||||||||||||| ||||| || || ||||
gtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTCCTAGGCACACTGGTGTCATGGTTGGTATGGGTCAGAAAGATG

upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 3
-----------gtggttatcctgaacttagtcttttcagcaaagcggtatgttcctcata-gcttaac--ggatcaccttccta----atgtttaacagGCAGGTT----TTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG
            |   |  | |||  |     |||   |    |     || |||||| | ||| ||   | || | ||| | |    ||| || | | ||||| |    |||| ||||||||||| || ||||| || || ||||| ||||| ||  | ||| | ||||| |||||||||||||||||||| ||||| ||||
gtctgttgtttctttcttgcttgatatgcagatttgttgtgttgtttgctgctcctcaaatgctcaatttgaataagctttccatgttatgctttatatgcagGCTGGATTTGCGGGTGATGATGCTCCCAGGGCAGTGTTTCCTAGTATTGTGGGTCGGCCAAGGCACACTGGTGTCATGGTTGGGATGGGTCAAAAAGATG

upper sequence: LOC_Os05g36290.2 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
---------------gtggttatcctgaacttagtctt--ttcagcaaagcggtatgttcctcatagcttaacggatcacc--ttcctaatgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG
                | | | |   ||  | | | |   |||||  |     | ||||  |  |   || ||  || | |  | |  ||   |   ||||| || ||||||||||||||||| || ||||| || ||||| || ||||| ||  |||| || ||||| |||||||||||||||||||||||||||||||
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33685885|gb|CF314124.1|CF314124
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|33793745|gb|CF322755.1|CF322755
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88301002|gb|CI592182.1|CI592182
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|33679584|gb|CF307823.1|CF307823
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACC
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACC
EST: gi|88314690|gb|CI606758.1|CI606758
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88313329|gb|CI594959.1|CI594959
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCGAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|33692460|gb|CF320699.1|CF320699
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88397191|gb|CI593403.1|CI593403
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGT
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTT-GCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGT
EST: gi|88345897|gb|CI632370.1|CI632370
EST:     AAGAGGATATTAAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCCTAGCATTGT
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCC-TAGCATTGT
EST: gi|88694864|gb|CI738902.1|CI738902
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88727147|gb|CI750802.1|CI750802
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCGCTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|33691169|gb|CF319408.1|CF319408
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88317015|gb|CI625652.1|CI625652
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|33684049|gb|CF312288.1|CF312288
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|33795246|gb|CF323495.1|CF323495
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88723081|gb|CI746591.1|CI746591
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88312636|gb|CI587544.1|CI587544
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTTG
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTT-GCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATT-G
EST: gi|88387045|gb|CI577831.1|CI577831
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|3760405|gb|C97659.1|C97659
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88359443|gb|CI620974.1|CI620974
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|33794076|gb|CF322928.1|CF322928
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|58692537|gb|CK081224.1|CK081224
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88694559|gb|CI738597.1|CI738597
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|27547333|gb|CA765360.2|CA765360
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88353449|gb|CI631634.1|CI631634
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGNCCGTCTTCCCTAGCATTGT
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGG-CCGTCTTCCCTAGCATTGT
EST: gi|88386829|gb|CI629156.1|CI629156
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|87005057|gb|CI308933.1|CI308933
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|33690873|gb|CF319112.1|CF319112
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88353492|gb|CI631677.1|CI631677
EST:     CGAGGATATTCAACCCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCCGTCTTCC-TAGCATTGT
genomic: CGAGGATATTCAACC-TATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCC-GTCTTCCCTAGCATTGT
EST: gi|88388846|gb|CI592734.1|CI592734
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGT
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGC-AGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGT
EST: gi|88426539|gb|CI579368.1|CI579368
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|33681940|gb|CF310179.1|CF310179
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|33364648|gb|BP432987.1|BP432987
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88720885|gb|CI744184.1|CI744184
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCGCTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88314807|gb|CI608266.1|CI608266
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88423607|gb|CI579319.1|CI579319
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88316026|gb|CI618902.1|CI618902
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88299885|gb|CI579946.1|CI579946
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88350555|gb|CI630073.1|CI630073
EST:     ACGAGGATATTCAANCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88371570|gb|CI602748.1|CI602748
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88423509|gb|CI579221.1|CI579221
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88337615|gb|CI630912.1|CI630912
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCCGTCTTCCCTAGCATTGT
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCC-GTCTTCCCTAGCATTGT
EST: gi|33684000|gb|CF312239.1|CF312239
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88346851|gb|CI628521.1|CI628521
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88719887|gb|CI741822.1|CI741822
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|33822947|gb|CF337279.1|CF337279
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88340775|gb|CI636935.1|CI636935
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|33797083|gb|CF324407.1|CF324407
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88730572|gb|CI754185.1|CI754185
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88730342|gb|CI753955.1|CI753955
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88398712|gb|CI598677.1|CI598677
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGT
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTT-GCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGT
EST: gi|88288622|gb|CI663411.1|CI663411
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88318195|gb|CI629476.1|CI629476
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88423232|gb|CI613533.1|CI613533
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGTGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88353049|gb|CI630227.1|CI630227
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88316651|gb|CI622897.1|CI622897
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88400750|gb|CI616755.1|CI616755
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88313868|gb|CI597499.1|CI597499
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88825475|gb|CI776040.1|CI776040
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88393300|gb|CI618188.1|CI618188
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88356576|gb|CI626191.1|CI626191
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
EST: gi|88400234|gb|CI590924.1|CI590924
EST:     ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAG                         GCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA
genomic: ACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 73 (upstream exon), 69 (downstream exon)
Score: 127

AACATCTGAAGAATGGCTGACGAGGATATTCAACCTATTGTGTGCGACAATGGCACTGGAATGGTCAAGgtggttatcc ... tgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcaaagcggtatgttcctcatagcttaacggatcaccttcctaatgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG
                                       tcctaat  putative branch site (score: 127)
                                          taatgtttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtggttatcctgaacttagtcttttcagcaaagcggtatgttcctcatagcttaacggatcaccttcctaatgtttaacagGCAGGTTTTGCTGGTGATGATGCACCAAGGGCCGTCTTCCCTAGCATTGTAGGGAGACCACGTCACACCGGTGTCATGGTTGGGATGGGCCAAAAGGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG