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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agatacttttaaatgagtagagacactggaaggcgaaatcttgctagcatattattgaccttcgtaaaccataattaaccaatgctcttttatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGATTCACCTTGGAACTTCAGAACGAATCTTCCTGATATTTTCCGTGACAAT

Basic information

species Oryza sativa
transcript LOC_Os05g36070.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29623970|gb|CB628981.1|CB628981
EST:     GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAG                         AAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
genomic: GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAGgtcttgcgat ... tatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
EST: gi|29623040|gb|CB628051.1|CB628051
EST:     GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAG                         AAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
genomic: GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAGgtcttgcgat ... tatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
EST: gi|29623889|gb|CB628900.1|CB628900
EST:     GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAG                         AAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
genomic: GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAGgtcttgcgat ... tatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
EST: gi|88430334|gb|CI567353.1|CI567353
EST:     GGGCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAG                         AAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
genomic: GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAGgtcttgcgat ... tatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
EST: gi|88422643|gb|CI571625.1|CI571625
EST:     GGCCGACCTCCTCCCGCCTACCTCAAGCCTCGTCTCGACTCGAATTGAAG                         AAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
genomic: GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAGgtcttgcgat ... tatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
EST: gi|319908628|gb|HS977756.1|HS977756
EST:     GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAG                         AAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
genomic: GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAGgtcttgcgat ... tatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
EST: gi|88306913|gb|CI639334.1|CI639334
EST:     GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAG                         AAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
genomic: GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAGgtcttgcgat ... tatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
EST: gi|58656513|gb|CK045193.1|CK045193
EST:     GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAG                         AAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
genomic: GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAGgtcttgcgat ... tatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
EST: gi|29623038|gb|CB628049.1|CB628049
EST:     GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAG                         AAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
genomic: GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAGgtcttgcgat ... tatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
EST: gi|88308479|gb|CI650888.1|CI650888
EST:     GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAG                         AAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
genomic: GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAGgtcttgcgat ... tatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
EST: gi|88394364|gb|CI603553.1|CI603553
EST:     GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAG                         AAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
genomic: GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAGgtcttgcgat ... tatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
EST: gi|88725058|gb|CI748317.1|CI748317
EST:     GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAG                         AAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
genomic: GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAGgtcttgcgat ... tatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
EST: gi|2275797|gb|C24774.1|C24774
EST:     GGCCGACCTCCTCCCGCCTACCTCAAGTNTCGTCTCGACTCGAATTGAAG                         AAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA
genomic: GGCCGACCTCCTCCCGCCTACCTCAAGTCTCGTCTCGACTCGAATTGAAGgtcttgcgat ... tatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcatattattgaccttcgtaaaccataattaaccaatgctcttttatatctcagAAGGGACAATACCGTGAAGTATCTGGGCTGTTGCTTCGTTATTTTCGTGGATTCACCTTGGAACTTCAGAACGAATCTTCCTGATATTTTCCGTGACAAT
                           aattaac  putative branch site (score: 2)
                                       ctcttttatatctc  putative PPT
                   taaaccataattaa  TA-rich tract