1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtttttttttgggttatggatttgctatcacatgtttatttgatcaagcatacttaagtttcttctgttaactagtatgtttttgtgggtgtgcatgtagGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGG
species | Oryza sativa |
transcript | LOC_Os05g36000.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
aagcatacttaagtttcttctgttaactagtatgtttttgtgggtgtgcatgtagGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGG
tgttaac putative branch site (score: 8)
tatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttttttgggttatggatttgctatcacatgtttatttgatcaagcatacttaagtttcttctgttaactagtatgtttttgtgggtgtgcatgtagGTTTCCATTCCTTCTGGTTGATAGAGTGATTGATTACAAGCCAGGGGAATATGCTGTTGGGATCAAGAATGTTACAATAAATGATAACTTCTTCCCAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - tttgcta
- - - - - - - - - - - - - - -acatgtt
- - - - - - - - - - - - - - - - - - - - - - - agcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttttg