1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtatatccattcatgcacatttcgaccaaaatctttacagaactgcatagggaacaactgaacactcgtttgaatttctggattgcagAAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCA
species | Oryza sativa |
transcript | LOC_Os05g35266.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCATGGCTCCAGGCTCTCCCTCTTCTCCGACGACTGCGAGCACCGGCAT AAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACTEST: gi|29670488|gb|CB666763.1|CB666763
genomic: GCCATGGCTCCAGGCTCTCCCTCTTCTCCGACGACTGCGAGCACCGGCATgtaagtatat ... tggattgcagAAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACT
EST: GCCATGGCTCCAGGCTCTCCCTCTTCTCCGACGACTGCGAGCACCGGCAT AAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACTEST: gi|88406081|gb|CI593861.1|CI593861
genomic: GCCATGGCTCCAGGCTCTCCCTCTTCTCCGACGACTGCGAGCACCGGCATgtaagtatat ... tggattgcagAAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACT
EST: GCCATGGCTCCAGGCTCTCCCTCTTCTCCGACGACTGCGAGCACCGGCAT AAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACT
genomic: GCCATGGCTCCAGGCTCTCCCTCTTCTCCGACGACTGCGAGCACCGGCATgtaagtatat ... tggattgcagAAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACT
tttacagaactgcatagggaacaactgaacactcgtttgaatttctggattgcagAAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCA
tttct CT-rich tract
tttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatatccattcatgcacatttcgaccaaaatctttacagaactgcatagggaacaactgaacactcgtttgaatttctggattgcagAAACTGGACGAGGGCAACCCGAACGACATCATGAACGAGGTGTCAAGAACTCACCAAGCAATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA