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gtaagcaactccaatgaactaaatttgaatagtagaggtttcatattcgcgtgcttatttcttgcgaagggatgcttatgttattacggagtacattatatcctttgattaattctatctttgtttgtttactgacattggttttgaattcgcttttggattaagCTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCAAGCAGAGATTACAATGTAGATATGGTCCCAAAG
species | Oryza sativa |
transcript | LOC_Os05g34540.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAG CTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCAEST: gi|58687409|gb|CK076096.1|CK076096
genomic: ATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAGgtaagcaact ... ttggattaagCTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCA
EST: ATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAG CTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCAEST: gi|58685922|gb|CK074609.1|CK074609
genomic: ATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAGgtaagcaact ... ttggattaagCTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCA
EST: ATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAG CTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCAEST: gi|58695181|gb|CK083868.1|CK083868
genomic: ATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAGgtaagcaact ... ttggattaagCTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCA
EST: ATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAG CTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCAEST: gi|58665153|gb|CK053839.1|CK053839
genomic: ATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAGgtaagcaact ... ttggattaagCTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCA
EST: GGAGGGGATTCCACCTCGCTCAACCTTAACCAG CTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCAEST: gi|29674549|gb|CB670824.1|CB670824
genomic: GGAGGGGATTCCACCTCGCTCAACCTTAACCAGgtaagcaact ... ttggattaagCTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCA
EST: ATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAG CTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCAEST: gi|58653041|gb|CK041721.1|CK041721
genomic: ATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAGgtaagcaact ... ttggattaagCTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCA
EST: ATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAG CTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCAEST: gi|29644094|gb|CB649101.1|CB649101
genomic: ATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAGgtaagcaact ... ttggattaagCTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCA
EST: ATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAG CTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCA
genomic: ATAGAAATGACTACTATGGAGGGGATTCCACCTCGCTCAACCTTAACCAGgtaagcaact ... ttggattaagCTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCA
aattctatctttgtttgtttactgacattggttttgaattcgcttttggattaagCTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCAAGCAGAGATTACAATGTAGATATGGTCCCAAAG
tactgac putative branch site (score: 41)
ttcgctttt putative PPT
ttttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcaactccaatgaactaaatttgaatagtagaggtttcatattcgcgtgcttatttcttgcgaagggatgcttatgttattacggagtacattatatcctttgattaattctatctttgtttgtttactgacattggttttgaattcgcttttggattaagCTGTGGAAGAGGTTTAGAGGGGAAGACAAACCCCCAGCTCATCTGGGTGCAAGCAGAGATTACAATGTAGATATGGTCCCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA