1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cctgtttacttctgttgtctatgcattttctccagacatgctggaagttctctgctgtctagtctggaacatatttgttaaccaatcatttctttaacagAGAACATAGATGTCACTACCAGTGAGACGCTTGAGACTGTTCTGAGCAATAAGGTTTTGGACAGGGAAACACCTGTGGGTTCCGATGATGTGCTTAGTTC
species | Oryza sativa |
transcript | LOC_Os05g33810.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGTTGGATTTTCCAGCAGATGGTAGTGGTGATGGTGAACCTAAGAGAAG AGAACATAGATGTCACTACCAGTGAGACGCTTGAGACTGTTCTGAGCAATAEST: gi|29679742|gb|CB676017.1|CB676017
genomic: CAGTTGGATTTTTCAGCAGATGGTAGTGGTGATGGTGAA-CTAAGAGAAGgtagatattt ... tctttaacagAGAACATAGATGTCACTACCAGTGAGACGCTTGAGACTGTTCTGAGCAATA
EST: CCAGTTGGATTTTTCAGCAGATGGTAGTGGTGATGGTGAACTAAGAGAAG AGAACATAGATGTCACTACCAGTGAGACGCTTGAGACTGTTCTGAGCAATAEST: gi|29643203|gb|CB648210.1|CB648210
genomic: CCAGTTGGATTTTTCAGCAGATGGTAGTGGTGATGGTGAACTAAGAGAAGgtagatattt ... tctttaacagAGAACATAGATGTCACTACCAGTGAGACGCTTGAGACTGTTCTGAGCAATA
EST: CCAGTTGGATTTTTCAGCAGATGGTAGTGGTGATGGTGAACTAAGAGAAG AGAACATAGATGTCACTACCAGTGAGACGCTTGAGACTGTTCTGAGCAATA
genomic: CCAGTTGGATTTTTCAGCAGATGGTAGTGGTGATGGTGAACTAAGAGAAGgtagatattt ... tctttaacagAGAACATAGATGTCACTACCAGTGAGACGCTTGAGACTGTTCTGAGCAATA
agttctctgctgtctagtctggaacatatttgttaaccaatcatttctttaacagAGAACATAGATGTCACTACCAGTGAGACGCTTGAGACTGTTCTGAGCAATAAGGTTTTGGACAGGGAAACACCTGTGGGTTCCGATGATGTGCTTAGTTC
tgttaac putative branch site (score: 17)
tcatttcttt putative PPT
aacatatttgttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgtttacttctgttgtctatgcattttctccagacatgctggaagttctctgctgtctagtctggaacatatttgttaaccaatcatttctttaacagAGAACATAGATGTCACTACCAGTGAGACGCTTGAGACTGTTCTGAGCAATAAGGTTTTGGACAGGGAAACACCTGTGGGTTCCGATGATGTGCTTAGTTC
- - - - - -ctgttgt
- - - - - - - - - ctatgca
- - - - - - - - - - - - - - - - - - catgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaccaa