1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtagatgtattttgtttcttgtaagtttgttatgctaaatgatcttgtaccggcggtttcctaatggaagcatttgcagCTATGTACTTATGGCTGAGCCAGATCACATCTTTGTGAGGCCATTGCCAAACTTAGCTCATGGCGACGAACCTGCTGCGTTTCCCTTCTTCTACATCAAA
species | Oryza sativa |
transcript | LOC_Os05g32060.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGCCTTGGGCATTTGTTCAATGGCTGAAGAAATCAAACATCAAAGAAGA CTATGTACTTATGGCTGAGCCAGATCACATCTTTGTGAGGCCATTGCCAAAEST: gi|88694036|gb|CI738074.1|CI738074
genomic: AGGCCTTGGGCATTTGTTCAATGGCTGAAGAAATCAAACATCAAAGAAGAgtaagtagat ... gcatttgcagCTATGTACTTATGGCTGAGCCAGATCACATCTTTGTGAGGCCATTGCCAAA
EST: AGGCCTTGGGCATTTGTTCAATGGCTGAAGAAATCAAACATCAAAGAAGA CTATGTACTTATGGCTGAGCCAGATCACATCTTTGTGAGGCCATTGCCAAAEST: gi|88717740|gb|CI741250.1|CI741250
genomic: AGGCCTTGGGCATTTGTTCAATGGCTGAAGAAATCAAACATCAAAGAAGAgtaagtagat ... gcatttgcagCTATGTACTTATGGCTGAGCCAGATCACATCTTTGTGAGGCCATTGCCAAA
EST: AGGCCTTGGGCATTTGTTCAATGGCTGAAGAAATCAAACATCAAAGAAGA CTATGTACTTATGGCTGAGCCAGATCACATCTTTGTGAGGCCATTGCCAAA
genomic: AGGCCTTGGGCATTTGTTCAATGGCTGAAGAAATCAAACATCAAAGAAGAgtaagtagat ... gcatttgcagCTATGTACTTATGGCTGAGCCAGATCACATCTTTGTGAGGCCATTGCCAAA
gtttgttatgctaaatgatcttgtaccggcggtttcctaatggaagcatttgcagCTATGTACTTATGGCTGAGCCAGATCACATCTTTGTGAGGCCATTGCCAAACTTAGCTCATGGCGACGAACCTGCTGCGTTTCCCTTCTTCTACATCAAA
tcctaat putative branch site (score: 5)
taaatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagatgtattttgtttcttgtaagtttgttatgctaaatgatcttgtaccggcggtttcctaatggaagcatttgcagCTATGTACTTATGGCTGAGCCAGATCACATCTTTGTGAGGCCATTGCCAAACTTAGCTCATGGCGACGAACCTGCTGCGTTTCCCTTCTTCTACATCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC