1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcattcatttcccaatcccaatcccaccccccatttcccattatccaaacacatcctaagtgtttgctcgaattttttctgatgtttatttcctgggcagGCACCCAAGCCTTCTTCTGGTCCCCACAAAGCTCGGGAGTGCTTGCCTTTGATCCTTATCCTCAGGAACAGGTTGAAGTATGCTCTGACCTACCGTGAGG
species | Oryza sativa |
transcript | LOC_Os05g30530.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGCTCAATGCCCCCAGCCATTGGATGCTTGACAAGCTTGGTGGAGCATTT GCACCCAAGCCTTCTTCTGGTCCCCACAAAGCTCGGGAGTGCTTGCCTTTGEST: gi|5002967|gb|AU068076.1|AU068076
genomic: GGCTCAATGCCCCCAGCCATTGGATGCTTGACAAGCTTGGTGGAGCATTTgtaagtacat ... tcctgggcagGCACCCAAGCCTTCTTCTGGTCCCCACAAAGCTCGGGAGTGCTTGCCTTTG
EST: GGCTCAATGCCCCCAGCCATTGGATGCTTGACAAGCTTGGTGGAGCATTT GCACCCAAGCCTTCTTCTGGTCCCCACAAAGCTCGGGAGTGCTTGCCTTTG
genomic: GGCTCAATGCCCCCAGCCATTGGATGCTTGACAAGCTTGGTGGAGCATTTgtaagtacat ... tcctgggcagGCACCCAAGCCTTCTTCTGGTCCCCACAAAGCTCGGGAGTGCTTGCCTTTG
caaacacatcctaagtgtttgctcgaattttttctgatgtttatttcctgggcagGCACCCAAGCCTTCTTCTGGTCCCCACAAAGCTCGGGAGTGCTTGCCTTTGATCCTTATCCTCAGGAACAGGTTGAAGTATGCTCTGACCTACCGTGAGG
ttctgat putative branch site (score: 40)
tttatttcct CT-rich tract
aattttttctgatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattcatttcccaatcccaatcccaccccccatttcccattatccaaacacatcctaagtgtttgctcgaattttttctgatgtttatttcctgggcagGCACCCAAGCCTTCTTCTGGTCCCCACAAAGCTCGGGAGTGCTTGCCTTTGATCCTTATCCTCAGGAACAGGTTGAAGTATGCTCTGACCTACCGTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
-cattcat
- - - - - - - - - - - - - - - - - - - - - atccaaa
- - - - - - - - - - - - - - - - - - - - - - - - -cacatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc