1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcttgttctctctgtctctctgaattttgtgtgaaattactccgtttcattggtcccgcgatgcaatgcgaattcgattatttccccgtgtcttctgcagAGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGTACCCGATTGATACGATAAAAACCAGGCTTCAG
species | Oryza sativa |
transcript | LOC_Os05g29860.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGTGGGGGGTGAAGAAGAGAAGCCCTTCAACTTCCTCCAGATTCTGTGTG AGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGTEST: gi|88954949|gb|CI720300.1|CI720300
genomic: GGTGGGGGGTGAAGAAGAGAAGCCCTTCAACTTCCTCCAGATTCTGTGTGgtgcgtcaac ... tcttctgcagAGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGT
EST: GGTGGGGGGTGAAGAAGAGAAGCCCTTCAACTTCCTCCAGATTCTGTGTG AGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGTEST: gi|58685345|gb|CK074032.1|CK074032
genomic: GGTGGGGGGTGAAGAAGAGAAGCCCTTCAACTTCCTCCAGATTCTGTGTGgtgcgtcaac ... tcttctgcagAGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGT
EST: GGCGGGGGGTGAAGAAGAGAAGCCCTTCAACTTCCTCCAGATTCTGTGTG AGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGTEST: gi|88424229|gb|CI581784.1|CI581784
genomic: GGTGGGGGGTGAAGAAGAGAAGCCCTTCAACTTCCTCCAGATTCTGTGTGgtgcgtcaac ... tcttctgcagAGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGT
EST: GGTGGGGGGTGAAGAAGAGAAGCCCTTCAACTTCCTCCAGATTCTGTGTG AGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGTEST: gi|88369502|gb|CI582697.1|CI582697
genomic: GGTGGGGGGTGAAGAAGAGAAGCCCTTCAACTTCCTCCAGATTCTGTGTGgtgcgtcaac ... tcttctgcagAGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGT
EST: GGTGGGGGGTGAAGAAGAGAAGCCCTTCAACTTCCTCCAGATTCTGTGTG AGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGTEST: gi|88594629|gb|CI714587.1|CI714587
genomic: GGTGGGGGGTGAAGAAGAGAAGCCCTTCAACTTCCTCCAGATTCTGTGTGgtgcgtcaac ... tcttctgcagAGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGT
EST: GGTGGGGGGTGAAGAAGAGAAGCCCTTCAACTTCCTCCAGATTCTGTGTG AGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGTEST: gi|58660070|gb|CK048750.1|CK048750
genomic: GGTGGGGGGTGAAGAAGAGAAGCCCTTCAACTTCCTCCAGATTCTGTGTGgtgcgtcaac ... tcttctgcagAGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGT
EST: GGCGGGGGGTGAAGAAGAGAAGCCCTTCAACTTCCTCCAGATTCTGTGTG AGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGT
genomic: GGTGGGGGGTGAAGAAGAGAAGCCCTTCAACTTCCTCCAGATTCTGTGTGgtgcgtcaac ... tcttctgcagAGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGT
ttcattggtcccgcgatgcaatgcgaattcgattatttccccgtgtcttctgcagAGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGTACCCGATTGATACGATAAAAACCAGGCTTCAG
tttccccgtgtcttct CT-rich tract
attattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttgttctctctgtctctctgaattttgtgtgaaattactccgtttcattggtcccgcgatgcaatgcgaattcgattatttccccgtgtcttctgcagAGGGCGTCATAGCTGGTGGCACCGCGGGTGTGGTGGTGGAAACAGCTCTGTACCCGATTGATACGATAAAAACCAGGCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC