1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ataaactaccttgttgacattatgtgtgaacatcactgagactgtgatcagaacttcagaattttgaaatctcaataatctaactacaatcatgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGCGCTAACACGCATCACAAAGCTGGATCGCAAGGAGCTCTGCTTGGTTGG
species | Oryza sativa |
transcript | LOC_Os05g19954.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGEST: gi|88330039|gb|CI652429.1|CI652429
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGEST: gi|88288671|gb|CI663460.1|CI663460
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGEST: gi|88688309|gb|CI731885.1|CI731885
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGEST: gi|88717775|gb|CI741285.1|CI741285
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGEST: gi|88693267|gb|CI736842.1|CI736842
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGEST: gi|88691366|gb|CI733949.1|CI733949
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGEST: gi|88316614|gb|CI622860.1|CI622860
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGEST: gi|88689634|gb|CI733210.1|CI733210
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGEST: gi|33807142|gb|CF329453.1|CF329453
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGEST: gi|88393631|gb|CI619923.1|CI619923
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGEST: gi|88689372|gb|CI732948.1|CI732948
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGEST: gi|88691736|gb|CI733814.1|CI733814
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGEST: gi|88332716|gb|CI660234.1|CI660234
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
EST: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAG GTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
genomic: GTCGTACAAGTGGCGTATGGTGATCGCCTACGACGGGACCAAGTTCAAAGgttcttggtc ... catgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATG
gatcagaacttcagaattttgaaatctcaataatctaactacaatcatgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGCGCTAACACGCATCACAAAGCTGGATCGCAAGGAGCTCTGCTTGGTTGG
atctaac putative branch site (score: 2)
aattttgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaactaccttgttgacattatgtgtgaacatcactgagactgtgatcagaacttcagaattttgaaatctcaataatctaactacaatcatgtttcagGTTGGCAGTATCAACCATCGCCTCCAACCATACAATGTAGTATTGAGAATGCGCTAACACGCATCACAAAGCTGGATCGCAAGGAGCTCTGCTTGGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT