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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cccatggttctttctgtgaacaccaacaaatgcttgtcaggtattcatcattatttttgtgttggctaattgttctagtttatttttgtgatcttttcagGAACTTATTCCGTAATTACTTGACTGGTCCCATTCCGTCGTTCATCGGAAAATTTACTTCAATGCAATACTT

Basic information

species Oryza sativa
transcript LOC_Os05g17604.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29682357|gb|CB678632.1|CB678632
EST:     GTTGGTCAAATACCTGCGGAGCTACAGAATCTCACCCATCTAGTGGACCT                         GAACTTATTCCGTAATTACTTGACTGGTCCCATTCCGTCGTTCATCGGAAA
genomic: GTTGGTCAAATACCTGCGGAGCTACAGAATCTCACCCATCTAGTGGACCTgtacggtatc ... atcttttcagGAACTTATTCCGTAATTACTTGACTGGTCCCATTCCGTCGTTCATCGGAAA
EST: gi|29622647|gb|CB627658.1|CB627658
EST:     GTTGGTCAAATACCTGCGGAGCTACAGAATCTCACCCATCTAGTGGACCT                         GAACTTATTCCGTAATTACTTGACTGGTCCCATTCCGTCGTTCATCGGAAA
genomic: GTTGGTCAAATACCTGCGGAGCTACAGAATCTCACCCATCTAGTGGACCTgtacggtatc ... atcttttcagGAACTTATTCCGTAATTACTTGACTGGTCCCATTCCGTCGTTCATCGGAAA
EST: gi|29624375|gb|CB629386.1|CB629386
EST:     GTTGGTCAAATACCTGCGGAGCTACAGAATCTCACCCATCTAGTGGACCT                         GAACTTATTCCGTAATTACTTGACTGGTCCCATTCCGTCGTTCATCGGAAA
genomic: GTTGGTCAAATACCTGCGGAGCTACAGAATCTCACCCATCTAGTGGACCTgtacggtatc ... atcttttcagGAACTTATTCCGTAATTACTTGACTGGTCCCATTCCGTCGTTCATCGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcattatttttgtgttggctaattgttctagtttatttttgtgatcttttcagGAACTTATTCCGTAATTACTTGACTGGTCCCATTCCGTCGTTCATCGGAAAATTTACTTCAATGCAATACTT
                  ggctaat  putative branch site (score: 3)
                                              tcttttc  putative PPT
                     taattgttctagttta  TA-rich tract