Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaccatttttctagtggttccagttgttaagcaaatattcatgggtaatggttttttaccaagcctttgtttgtgtgatagGTCCTTGGACGGTTGGCGTCCCAAATAGCTGTTGTGCTTCAGGGCAAGGACAAGCCAACTTATGCACCACATGTGGAAAACAGAGACATGTGCGTTGTGC

Basic information

species Oryza sativa
transcript LOC_Os05g15360.7
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g15360.7 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G044584_T02 (Zea mays), 3'ss of exon 2
gttaccatttttctagtggttccagttgttaagcaaatattcatgggtaatggtttt---ttaccaagcctttgtttgtgtgata--gGTCCTTGGACGGTTGGCGTCCCAAATAGCTGTTGTGCTTCAGGGCAAGGACAAGCCAACTTATGCACCACATGTGGAAAACAGAGACATGTGCGTTGTGC
||||  ||| || |  | |||  |||||  | |   |  ||  ||   || || |      |   | |   || | | |||||||  ||| || || || ||||| ||||||||||||||||||||||| |                                                         
gttaggattgtttttctagtttgagttgcaaggatgaacttattgtaaaaaggatagaggctgtgaggtaattttctatgtgatatagGTGCTCGGGCGATTGGCTTCCCAAATAGCTGTTGTGCTTCAAG---------------------------------------------------------

upper sequence: LOC_Os05g15360.7 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G163473_T01 (Zea mays), 3'ss of exon 2
gttaccatttttctagtggttccagttgt-taagcaaa--tattc----atgggtaatggttttttaccaagcctttgtttgtgtgatagGTCCTTGGACGGTTGGCGTCCCAAATAGCTGTTGTGCTTCAGGGCAAGGACAAGCCAACTTATGCACCACATGTGGAAAACAGAGACATGTGCGTTGTGC
||||  ||| || |  | | |  ||| |  |     ||  |||      | || ||  || |       ||   ||| | ||||  |||||| || ||||| ||||| ||||||||||| ||||||||||| |||||||| || || || ||||| ||||||||||||||  ||||||||||| |||| |
gttaggattgtttttctagcttgagtagcatggatgaacttatctcaagaaggatagaggctacgaggtaaat-tttctatgtgatatagGTGCTGGGACGATTGGCTTCCCAAATAGCCGTTGTGCTTCAAGGCAAGGATAAACCGACCTATGCGCCACATGTGGAAAATGGAGACATGTGCATTGTAC

upper sequence: LOC_Os05g15360.7 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G044584_T03 (Zea mays), 3'ss of exon 2
gttaccatttttctagtggttccagttgttaagcaaatattcatgggtaatggtttt---ttaccaagcctttgtttgtgtgata--gGTCCTTGGACGGTTGGCGTCCCAAATAGCTGTTGTGCTTCAGGGCAAGGACAAGCCAACTTATGCACCACATGTGGAAAACAGAGACATGTGCGTTGTGC
||||  ||| || |  | |||  |||||  | |   |  ||  ||   || || |      |   | |   || | | |||||||  ||| || || || ||||| ||||||||||||||||||||||| |||||||| || || || |||||||||||||| |||||  ||||||||||| |||| |
gttaggattgtttttctagtttgagttgcaaggatgaacttattgtaaaaaggatagaggctgtgaggtaattttctatgtgatatagGTGCTCGGGCGATTGGCTTCCCAAATAGCTGTTGTGCTTCAAGGCAAGGATAAACCTACCTATGCACCACATGTAGAAAATGGAGACATGTGCATTGTAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88513712|gb|CI441218.1|CI441218
EST:     GAATCAATTTAGATGGTTTGAGATGGTGTGTATTTGACGCAAAGGGCCAG                         GTCCTTGGACGGTTGGCGTCCCAAATAGCTGTTGTGCTTCAGGGCAAGGAC
genomic: GAATCAATTTAGATGGTTTGAGATGGTGTGTATTTGACGCAAAGGGCCAGgttaccattt ... tgtgtgatagGTCCTTGGACGGTTGGCGTCCCAAATAGCTGTTGTGCTTCAGGGCAAGGAC
EST: gi|88489215|gb|CI426487.1|CI426487
EST:     GAATCAATTTAGATGGTTTGAGATGGTGTGTATTTGACGCAAAGGGCCAG                         GTCCTTGGACGGTTGGCGTCCCAAATAGCTGTTGTGCTTCAGGGCAAGGAC
genomic: GAATCAATTTAGATGGTTTGAGATGGTGTGTATTTGACGCAAAGGGCCAGgttaccattt ... tgtgtgatagGTCCTTGGACGGTTGGCGTCCCAAATAGCTGTTGTGCTTCAGGGCAAGGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagcaaatattcatgggtaatggttttttaccaagcctttgtttgtgtgatagGTCCTTGGACGGTTGGCGTCCCAAATAGCTGTTGTGCTTCAGGGCAAGGACAAGCCAACTTATGCACCACATGTGGAAAACAGAGACATGTGCGTTGTGC
                                     cctttgttt  CT-rich tract
      aaatattcat  TA-rich tract