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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgaccattgattgcccttgctttcaccttttgttactacatctttacatttataccacatttcaagtgaactatatcctaatgagcatatttctacagGATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAAATCAAGGGTGAACAGCCAAATACTGATGCACCTTTAGGGGATTCTGATT

Basic information

species Oryza sativa
transcript LOC_Os05g12170.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163929224|gb|EG711009.1|EG711009
EST:     AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAG                         GATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAA
genomic: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAGgtgagcttgt ... atttctacagGATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAA
EST: gi|29671008|gb|CB667283.1|CB667283
EST:     AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAG                         GATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAA
genomic: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAGgtgagcttgt ... atttctacagGATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAA
EST: gi|29664499|gb|CB660774.1|CB660774
EST:     AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAG                         GATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAA
genomic: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAGgtgagcttgt ... atttctacagGATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacatttataccacatttcaagtgaactatatcctaatgagcatatttctacagGATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAAATCAAGGGTGAACAGCCAAATACTGATGCACCTTTAGGGGATTCTGATT
                                tcctaat  putative branch site (score: 2)
 tatttct  putative PPT
 atatttcta  TA-rich tract