1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...catgaccattgattgcccttgctttcaccttttgttactacatctttacatttataccacatttcaagtgaactatatcctaatgagcatatttctacagGATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAAATCAAGGGTGAACAGCCAAATACTGATGCACCTTTAGGGGATTCTGATT
species | Oryza sativa |
transcript | LOC_Os05g12170.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAG GATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAAEST: gi|29671008|gb|CB667283.1|CB667283
genomic: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAGgtgagcttgt ... atttctacagGATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAA
EST: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAG GATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAAEST: gi|29664499|gb|CB660774.1|CB660774
genomic: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAGgtgagcttgt ... atttctacagGATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAA
EST: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAG GATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAA
genomic: AATCTGACGAACACGTGGGGGCTTGAGCCGCAATGAAGGAGGGTTCCCAGgtgagcttgt ... atttctacagGATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAA
ttacatttataccacatttcaagtgaactatatcctaatgagcatatttctacagGATGTTGAGAGCAAGGCAAAGGTGCATCCATTGGTGCAAGGTGATGATGAAATCAAGGGTGAACAGCCAAATACTGATGCACCTTTAGGGGATTCTGATT
tcctaat putative branch site (score: 2)
tatttct putative PPT
atatttcta TA-rich tract