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gtattatgcctaagagtggtggatcatagttgccttttgctgtattgtcagttgctgatttgattcacaaacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTATTGTGACAAGCATTGATGGAAGAAATGGACAGGCTAAACAG
species | Oryza sativa |
transcript | LOC_Os05g04340.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTEST: gi|12622374|gb|AU172587.1|AU172587
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTEST: gi|88308962|gb|CI654245.1|CI654245
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAEST: gi|29628929|gb|CB633940.1|CB633940
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCA
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGGTGTCAATGGCAATGGGACAGAACCTGGTCATATTEST: gi|88400318|gb|CI591008.1|CI591008
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTEST: gi|88350886|gb|CI619144.1|CI619144
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTEST: gi|88298568|gb|CI563563.1|CI563563
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTEST: gi|88423830|gb|CI609861.1|CI609861
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGGCTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTEST: gi|86883938|gb|CI309910.1|CI309910
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTEST: gi|86901784|gb|CI310546.1|CI310546
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTEST: gi|88350866|gb|CI619124.1|CI619124
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCEST: gi|88389101|gb|CI595335.1|CI595335
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACC
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTEST: gi|58601571|gb|CK012099.1|CK012099
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATATTEST: gi|58663289|gb|CK051975.1|CK051975
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATATTEST: gi|33658344|gb|CF280957.1|CF280957
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTEST: gi|29630931|gb|CB635940.1|CB635940
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATATTEST: gi|58603162|gb|CK013690.1|CK013690
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATATTEST: gi|29626488|gb|CB631499.1|CB631499
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATACTTGTCAATGGCAATGGGACAGAACCTGGTCATATTEST: gi|88354859|gb|CI614137.1|CI614137
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTEST: gi|29629558|gb|CB634567.1|CB634567
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATATTEST: gi|25798115|gb|CA754076.1|CA754076
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTEST: gi|58598716|gb|CK009244.1|CK009244
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATATTEST: gi|88342816|gb|CI640149.1|CI640149
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGEST: gi|88412181|gb|CI573457.1|CI573457
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATG
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTEST: gi|88395838|gb|CI593040.1|CI593040
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
EST: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAG GACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
genomic: ACCGACTTCCGAATGAGATGAGCAATATGAGTATAAGGGATGATAATAAGgtattatgcc ... aacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTT
catagttgccttttgctgtattgtcagttgctgatttgattcacaaacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTATTGTGACAAGCATTGATGGAAGAAATGGACAGGCTAAACAG
atttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattatgcctaagagtggtggatcatagttgccttttgctgtattgtcagttgctgatttgattcacaaacgtcgcagGACATTGACGACATAGTTGTCAATGGCAATGGGACAGAACCTGGTCATGTTATTGTGACAAGCATTGATGGAAGAAATGGACAGGCTAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA