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...aatgtcatcttgtttgttcaatttactcccgctttgtttgatatggagtattccagtttgttattttgattatgccataaataaatttctgatttcacagAATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCCTATAAAGTACGATCAGATCCGTGACATCCTGAATGGACTTGCTGAGAGG
species | Oryza sativa |
transcript | LOC_Os05g03820.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACCTCATGGCCTACCTCGTCTCCGGGTGCAAGCCCAAGGAGAACTGGAG AATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCCEST: gi|88573359|gb|CI664930.1|CI664930
genomic: GACCTCGTGGCCTACCTCGTCTCCGGGTGCAAGCCCAAGGAGAACTGGAGgtgaggagag ... gatttcacagAATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCC
EST: GACCTCATGGCCTACCTCGTCTCCGGGTGCAAGCCCAAGGAGAACTGGAG AATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCCEST: gi|58658531|gb|CK047211.1|CK047211
genomic: GACCTCGTGGCCTACCTCGTCTCCGGGTGCAAGCCCAAGGAGAACTGGAGgtgaggagag ... gatttcacagAATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCC
EST: CCAAGGAAGAAC-GGAG AATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCCEST: gi|88342557|gb|CI637133.1|CI637133
genomic: CCAAGG-AGAACTGGAGgtgaggagag ... gatttcacagAATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCC
EST: GACCTCATGGCCTACCTCGTCTCCGGGTGCAAGCCCAAGGAGAACTGGAG AATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCCEST: gi|88336064|gb|CI647258.1|CI647258
genomic: GACCTCGTGGCCTACCTCGTCTCCGGGTGCAAGCCCAAGGAGAACTGGAGgtgaggagag ... gatttcacagAATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCC
EST: GACCTCATGGCCTACCTCGTCTCCGGGTGCAAGCCCAAGGAGAACTGGAG AATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCCEST: gi|29677970|gb|CB674245.1|CB674245
genomic: GACCTCGTGGCCTACCTCGTCTCCGGGTGCAAGCCCAAGGAGAACTGGAGgtgaggagag ... gatttcacagAATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCC
EST: GACCTCGTGGCCTACCTCGTCTCCGGGTGCAAGCCCAAGGAGAACTGGAG AATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCC
genomic: GACCTCGTGGCCTACCTCGTCTCCGGGTGCAAGCCCAAGGAGAACTGGAGgtgaggagag ... gatttcacagAATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCC
gagtattccagtttgttattttgattatgccataaataaatttctgatttcacagAATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCCTATAAAGTACGATCAGATCCGTGACATCCTGAATGGACTTGCTGAGAGG
ttctgat putative branch site (score: 3)
ttattttgattatgcc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtcatcttgtttgttcaatttactcccgctttgtttgatatggagtattccagtttgttattttgattatgccataaataaatttctgatttcacagAATTGGCACAGAACATGAGAAGTTCGGTTTTGAAGTTGATACATTGCGTCCTATAAAGTACGATCAGATCCGTGACATCCTGAATGGACTTGCTGAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG