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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagagagctcagcagttgcagttcagaaattatgtttggttcttctttttttttaatggttctcacaatgtgaattttgctgcattcagGCCCATGAGTGATGAAGAGACAAAGTCGAATACTCCGGTAGTGATCTCGTGCAATGAGCGCCGCCGTGAGGTCGCCGCGACACAAATTATTGCCAATAAG

Basic information

species Oryza sativa
transcript LOC_Os05g02670.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g02670.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G024576_T01 (Zea mays), 3'ss of exon 1
gtgaagagagctcagcagttgcagttcagaaattatgtttggttcttctttttttttaatggttctcacaatgtgaattttgctgcattcagGCCCATGAGTGATGAAGAGACAAAGTCGAATACTCCGGTAGTGATCTCGTGCAATGAGCGCCGCCGTGAGGTCGCCGCGACACAAATTATTGCCAATAAG
||| |||| |||||| ||||  || | | || || ||| |  || |  ||||         ||| ||||||||||   |||| | ||||||||||  ||||||||||||| ||||||||||||||||| || || || ||||||||||| || ||||| || || ||||| || ||||||||||||||||||
gtggagagggctcagtagttaaagcttaaaagttctgtctaattttgttttt---------gttatcacaatgtgtgatttgatacattcagGCCGTTGAGTGATGAAGAAACAAAGTCGAATACTCCTGTGGTTATTTCGTGCAATGACCGTCGCCGGGAAGTTGCCGCCACTCAAATTATTGCCAATAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88407279|gb|CI583737.1|CI583737
EST:     AGAGGTGATAAGGAGAAGGGAGTCAATGTGCAGGTCATTCTCAGATGCAG                         GCCCATGAGTGATGAAGAGACAAAGTCGAATACTCCGGTAGTGATCTCGTG
genomic: AGAGGTGATAAGGAGAAGGGAGTCAATGTGCAGGTCATTCTCAGATGCAGgtgaagagag ... ctgcattcagGCCCATGAGTGATGAAGAGACAAAGTCGAATACTCCGGTAGTGATCTCGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggttcttctttttttttaatggttctcacaatgtgaattttgctgcattcagGCCCATGAGTGATGAAGAGACAAAGTCGAATACTCCGGTAGTGATCTCGTGCAATGAGCGCCGCCGTGAGGTCGCCGCGACACAAATTATTGCCAATAAG
                         ttctcac  putative branch site (score: 2)
                                        ttttgct  putative PPT
     ttcttcttttttttta  TA-rich tract