1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcgagatccccaccaaaatctctcttcttttttgctactgtttttcgaattactagtatctgcttgaaaatatcatattttgattttgaatgaaaaagaaagatctcgtcttgtccttttgttttctcaccttgctttgctcttcttctgcttatgctgcagACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAGCTCCTCCAGGCCGACGCAAAT
species | Oryza sativa |
transcript | LOC_Os05g02130.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGCACAAGCAG ACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAGEST: gi|88367923|gb|CI572644.1|CI572644
genomic: TGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGCACAAGCAGgtgcgagatc ... tatgctgcagACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAG
EST: TGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGGACAAGCAG ACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGGGTGCTCAAGEST: gi|88368292|gb|CI577563.1|CI577563
genomic: TGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGCACAAGCAGgtgcgagatc ... tatgctgcagACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAG
EST: TGTTCTTGGATCGGGGGGCGCCGGCGGACGCGGTGAATCGGCACAAGCAG ACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGGTCAAGEST: gi|86908937|gb|CI302648.1|CI302648
genomic: TGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGCACAAGCAGgtgcgagatc ... tatgctgcagACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAG
EST: TGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGCACAAGCAG ACGCCGCTGATGCTCGCGGCCATGCAEST: gi|87011260|gb|CI289530.1|CI289530
genomic: TGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGCACAAGCAGgtgcgagatc ... tatgctgcagACGCCGCTGATGCTCGCGGCCATGCA
EST: TGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGCACAAGCAG ACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAGEST: gi|87015462|gb|CI303068.1|CI303068
genomic: TGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGCACAAGCAGgtgcgagatc ... tatgctgcagACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAG
EST: TGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGCACAAGCAG ACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAGEST: gi|88403350|gb|CI573073.1|CI573073
genomic: TGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGCACAAGCAGgtgcgagatc ... tatgctgcagACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAG
EST: TGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATTGGCACAAGCAG ACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAG
genomic: TGTTCTTGGATCGCGGGGCGCCGCCGGACGCGGTGAATCGGCACAAGCAGgtgcgagatc ... tatgctgcagACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAG
gtcttgtccttttgttttctcaccttgctttgctcttcttctgcttatgctgcagACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAGCTCCTCCAGGCCGACGCAAAT
ttctcac putative branch site (score: 17)
ccttttgttttctcac CT-rich tract
ttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgagatccccaccaaaatctctcttcttttttgctactgtttttcgaattactagtatctgcttgaaaatatcatattttgattttgaatgaaaaagaaagatctcgtcttgtccttttgttttctcaccttgctttgctcttcttctgcttatgctgcagACGCCGCTGATGCTCGCGGCCATGCACGGCAAGATCGACTGCGTGCTCAAGCTCCTCCAGGCCGACGCAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC