Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG

Basic information

species Oryza sativa
transcript LOC_Os05g01600.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 2
gtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacatta-cattacatttc-atcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG
            |      |||| | ||||  |  |  |      |||  | ||  |  |||||  || ||   ||   | || ||| | ||||||||||| || || ||||||||||||||||| || |||||||| || ||||| |||||||| ||||||||||| |||||||| ||||||||||||||||
-----------gtcagtgcttttccccttaatttgtacagccatagtctcccccacccaaatatgccactaattttgtgtatctatcttctagGCTGGTTTTGCCGGCGATGATGCACCAAGGGCTGTATTCCCTAGCATCGTTGGGCGTCCTCGTCACACCGGTGTCATGGTAGGGATGGGGCAGAAGGATG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G067985_T06 (Zea mays), 3'ss of exon 2
-----------gtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG
            |   | |    |  ||    | |  |        ||   |  |   | | | || |  |||||  || || ||||  | |  || | ||||||||||| ||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| |
tgtctgcgacaatggcactggaatggtcaaggtcagcccccgtccctgactttgacaacctttacttccaaatatgccacta-attatgtct-gtcttttagGCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGACG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G067985_T08 (Zea mays), 3'ss of exon 1
gtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG
                    |   | | |  |   ||   ||||   | | |  | |  |||||  || || ||||  | |  || | ||||||||||| |||||||| |||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||
-------------------gtcagccccttggccctgacttgtacaacctttatttccaaatatgccacta-attatgtct-gtcctttagGCTGGTTTTGCTGGGGACGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGATG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 2
gtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG
                     | |  |        ||   |  |   | | | || |  |||||  || || ||||  | |  || | ||||||||||| ||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| |
--------------------gtcagcccccgtccctgactttgacaacctttacttccaaatatgccacta-attatgtct-gtcttttagGCTGGTTTTGCTGGCGATGATGCACCAAGGGCGGTTTTCCCTAGCATTGTTGGCCGTCCTCGCCACACTGGTGTCATGGTAGGGATGGGACAGAAGGACG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 3
gtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacat-tacatttca-tcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG
||| |     | |   |  |    | |  || | || |     |  |  | |||   |         ||||  | ||| ||  | || | ||||||||||| ||||| || |||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||
gtcagccccccctcccccctgac-ccccaacttgatttgtacaaccttatttccaagtatgccactaattatgtgtaccttctactcttctagGCTGGTTTTGCTGGCGACGATGCACCAAGGGCTGTTTTCCCTAGTATTGTTGGCCGTCCTCGCCACACTGGTGTTATGGTAGGGATGGGACAGAAGGATG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 2
gtctgattttctttttcttttttactcttacgtaatgtaatgtat--gtc---gtctc-ctgctgaatattacattacattacatttcatcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG
   |  |  | |     || ||   |  |  |||||   || |||  |||   || ||  |    ||   |  ||| |  ||    ||    |  |||| || || ||||| |||||||| || ||||| ||||| || |||||||||||||| ||||| || || ||||||||||| || ||||| || |||||||
-gttagtactttgcagtttcttctgttatgtgtaattgcatctattagtctcggtttcgttatcaaacgatttatttctataatgatctgtgtacagGCAGGATTTGCTGGTGATGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTTGGCCGACCTCGTCATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 2
gtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG
||  |   ||| |    |||| |  | || | |      ||| | ||| |    |  | | |   | | |  |||  | |  ||     |||| || || ||||| || ||||| || ||||| || || || |||||||||||||| ||||| || || ||||||||||| || ||||| || |||||||
gttagtacttcgtggatttttgttttgttgcatgtgcatatgcaagtcttgagttcataagtga-ataatttattttaat--atggaacagGCAGGATTTGCTGGTGACGATGCTCCTAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 2
gtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattac---attacattacatt-tcatc---atgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG-
    | |  |  ||| |  |||     |   |||||   || ||| | ||||     | | |||| |   |||   ||| ||  |||||    |  |||| || || |||| | | ||||| || ||||| ||||| || ||||||||||| || ||||| || || ||||||||||| || ||||| || ||||||| 
----gttagtactttgcagtttcttgttagtgtaattgcatctatttagtcttggtttcattattgctcaatttatttaaatgatcatctgtgtacagGCAGGATTTGCTGTG-ACGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTTGGTCGACCTCGTCATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATGC

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 2
---------------gtctgattttctttttcttttt-tactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatca--------tgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG
                ||  |||      | ||| || | || ||     |   | |       ||       | ||||| | ||||   || ||||  ||         || |||| ||||| || || ||||| || || |||||||||||||| |||||| |||| || || ||||| |||||||| ||||| || ||||| ||||||||||
gttagaacatgttttttccaattgatgagtgcttcttgtgctattgaagtagacagttcgctctgtgcttgcttaaatatgatattaatatatattttttctccaatgtttgcagGCGGGTTTTGCAGGTGATGACGCTCCTAGGGCCGTGTTCCCCAGTATTATTGGGCGACCACGCCATACCGGTGTAATGGTTGGGATGGGTCAGAAGGATG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 2
-----------------------gtctgattttctttttcttttttac----tcttacgtaatgtaat-gtatgtcgtctcctgctgaatattacatt-acat---tacatttcatcatgt----agGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG
                        |  |  |||||| | |  ||  |        | |    |||  | |  |    |    || | ||||| | ||| | ||   ||  ||||   ||||    |||||||||| || || |||||||| || |||||||||||||| || ||| ||||  | || ||||| || ||||| ||||| || ||||| ||||||||||
gttagaagatgttttgccaattgatgagtgtttcttgtgccattgaagaagactgttcactctgtgcttgcttagtattcattgttaaatatgatattgatatatatatttttctcgatgtttgcagGCTGGTTTTGCAGGTGATGATGCTCCTAGGGCCGTGTTCCCCAGCATTATTGGGAGACCACGCCATACTGGTGTAATGGTTGGGATGGGTCAGAAGGATG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 1
gtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatg---tagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG
||  |   ||       || |||  | || | |    |  || || |  |  |||   |   || ||   |  ||  |||| |  |||    ||||||| || ||||| |||||||| || ||||| || || || |||||||||||||| ||||| ||||| ||||||||||| || ||||| || |||||||
gttagtacttagcggctttgttttttgtttcatgtgcttgtgcatctgctagccttgagttcataactgaatctttgattttaatatggaacagGCTGGATTTGCTGGTGATGATGCTCCCAGGGCTGTCTTTCCCAGTATTGTTGGCCGACCTCGACACACTGGTGTTATGGTTGGGATGGGTCAAAAGGATG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
lower sequence: AT5G09810.1 (Arabidopsis thaliana), 3'ss of exon 2
gtctgattttctttttcttttttactcttacgtaatg-taatgtatgtcgtct--cctgctgaatattacattacattacatttcatcat--gtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG
   ||| ||    | | | |||   |  |   |  |  |||  |   | ||    | ||   || | |||    ||| |  |||    ||    |||||||||| ||||| |||||||| || || || |||||||| ||||||||||| |||||| | ||||| ||||| ||||| || ||||| ||||| ||||
--gtgagttagactgtttatttagatactgtatggttctaaccttctttgttgtacatgtgtaagactactgatcatgatttttgtatattaacagGCTGGTTTTGCTGGTGATGATGCCCCGAGAGCAGTGTTCCCAAGTATTGTTGGTCGTCCTAGGCACACTGGTGTCATGGTTGGTATGGGTCAGAAAGATG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 1
----gtctgattttctttttcttttttactcttacgta-atgtaatgtatgtcgtctcctgctgaatatt---acatta-cattacatttcatcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG
      |||||| | |||    |    |     |  |  ||  | ||  | || |     | |   | ||   |||||| |  | |     |   || ||||||| || ||||| |||||||| || ||||| |||||||| |||||||||||||| ||||| ||||| ||||| ||||| || ||||| || |||||||
attaaactgattctgtttgctgtggcgaggtgaatttgcattcagtgattatctttgttagttttgttttcacacattaacgctgctcaaaaatgtgcagGCTGGATTTGCTGGTGATGATGCTCCGAGGGCTGTGTTCCCCAGTATTGTTGGCCGACCTCGACACACAGGTGTCATGGTTGGGATGGGCCAAAAGGATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88348795|gb|CI631489.1|CI631489
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCCAAGGGCCGTGTTCCCTACTATTGT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCA-CCAAGGGCCGTGTTCCCTAGTATTGT
EST: gi|58673476|gb|CK062162.1|CK062162
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88416963|gb|CI573678.1|CI573678
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|2442739|gb|C74510.1|C74510
EST:     GTGAGGACATCCAGCCTCTTGTCTGTNACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88737212|gb|CI760720.1|CI760720
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|571813|gb|D41324.1|D41324
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88315658|gb|CI615530.1|CI615530
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58684497|gb|CK073184.1|CK073184
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88391876|gb|CI603395.1|CI603395
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGAAAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88728261|gb|CI751771.1|CI751771
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88359433|gb|CI620964.1|CI620964
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|12623182|gb|AU173395.1|AU173395
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88376957|gb|CI597741.1|CI597741
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88828120|gb|CI778685.1|CI778685
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTACTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58682619|gb|CK071306.1|CK071306
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88417110|gb|CI576184.1|CI576184
EST:     GTGAGGACATTCAGCCTCTTGTTTGTGAAAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAATATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|33658243|gb|CF280857.1|CF280857
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|163928047|gb|EG713551.1|EG713551
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88337512|gb|CI630809.1|CI630809
EST:     GTGAGGACATTCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTC-AG                         GCTGGTTTCGCTGGGGATGATGCACCAGGGGCCGTGTTCCCTACTATTGTG
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88399175|gb|CI618365.1|CI618365
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|24208063|gb|AU225090.1|AU225090
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|86831905|gb|CI303345.1|CI303345
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGCATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|14713702|gb|AU197673.1|AU197673
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88388119|gb|CI590395.1|CI590395
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|3759155|gb|C96854.1|C96854
EST:     GTGAGGACATCCAGCCTCTTGTCTGTNACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58595519|gb|CK006047.1|CK006047
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|572180|gb|D41691.1|D41691
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|29640111|gb|CB645120.1|CB645120
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|426222|gb|D22084.1|D22084
EST:     GTGAGGACATCCAGCCTCTTGTCTGTNACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88324398|gb|CI566211.1|CI566211
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88300915|gb|CI592095.1|CI592095
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88402070|gb|CI593782.1|CI593782
EST:     TGAGTGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTTG
genomic: TGAG-GACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGC-TGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTA-TTG
EST: gi|88396069|gb|CI595617.1|CI595617
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88725417|gb|CI748676.1|CI748676
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88399512|gb|CI606133.1|CI606133
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88720829|gb|CI744128.1|CI744128
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88400816|gb|CI616821.1|CI616821
EST:     GTGGGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88827497|gb|CI778062.1|CI778062
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88316317|gb|CI621556.1|CI621556
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88360850|gb|CI625156.1|CI625156
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88304074|gb|CI599762.1|CI599762
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagG-CTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGT
EST: gi|29655669|gb|CB651944.1|CB651944
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88719016|gb|CI742526.1|CI742526
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88743897|gb|CI765333.1|CI765333
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88717534|gb|CI741044.1|CI741044
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTCCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88329416|gb|CI648471.1|CI648471
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58598515|gb|CK009043.1|CK009043
EST:     GCACTGGAATGGTCAA-                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88356765|gb|CI619251.1|CI619251
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTACTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58686331|gb|CK075018.1|CK075018
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58682347|gb|CK071034.1|CK071034
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58676432|gb|CK065119.1|CK065119
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88735758|gb|CI759266.1|CI759266
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88570629|gb|CI662002.1|CI662002
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|88360914|gb|CI625220.1|CI625220
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|58670222|gb|CK058908.1|CK058908
EST:     GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
EST: gi|15072237|gb|C19411.2|C19411
EST:     GTGAGGACATCCAGCCTCTTG--TGTGACAATGGCACTGGAATGGTCAAG                         GCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT
genomic: GTGAGGACATCCAGCCTCTTGTCTGTGACAATGGCACTGGAATGGTCAAGgtctgatttt ... catcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG
                                          tttcatc  CT-rich tract
                       aatattacattacatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtctgattttctttttcttttttactcttacgtaatgtaatgtatgtcgtctcctgctgaatattacattacattacatttcatcatgtagGCTGGTTTCGCTGGGGATGATGCACCAAGGGCCGTGTTCCCTAGTATTGTTGGCCGTCCTCGCCACACCGGTGTTATGGTAGGAATGGGGCAGAAGGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG